View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3462_low_15 (Length: 236)
Name: NF3462_low_15
Description: NF3462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3462_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 27643059 - 27643272
Alignment:
| Q |
5 |
aatgcaattcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacc |
104 |
Q |
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| T |
27643059 |
aatgcaattcaatgtttgtagacgggtatgagtttcatctccctcaacttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacc |
27643158 |
T |
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| Q |
105 |
catagttcttactcttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtctt |
204 |
Q |
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|||| | |||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27643159 |
cataatccttacttttgttcatactagatacatgttgaaactgaaaccgcagaactggcaccgttgcttcaaaggaagcaatttcctccaatttggtctt |
27643258 |
T |
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| Q |
205 |
atgaagcccatatt |
218 |
Q |
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|||||||||||||| |
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| T |
27643259 |
atgaagcccatatt |
27643272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 50247819 - 50247619
Alignment:
| Q |
18 |
gttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacccatagttcttact |
117 |
Q |
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| T |
50247819 |
gttggtaggagggtataagtttcatctccctcagcttagccacccagagtttgatactcttaaacgtatcagcatactctaaaaacccataatctttact |
50247720 |
T |
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| Q |
118 |
cttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtcttatgaagcccatat |
217 |
Q |
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| T |
50247719 |
cttgttcatactagatacatgttgaaactcaaaccgtacaactggcaccatggcttcaaagcaagcaatttccttcaacttggtcttatgaagcccatat |
50247620 |
T |
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| Q |
218 |
t |
218 |
Q |
| |
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| T |
50247619 |
t |
50247619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 50254962 - 50254758
Alignment:
| Q |
12 |
ttcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacccatagtt |
111 |
Q |
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||||| ||| ||||| || |||||| ||||||||||||||||| |||||||||| | | ||| |||||||| || ||||||||||| ||| |||| || |
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| T |
50254962 |
ttcaatgttcgtagatgggtatgagattcatctccctcagcttcatcacccagaatttcacactattaaacgtctcagcatactcaaaaaactcataatt |
50254863 |
T |
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| Q |
112 |
cttactcttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtcttatgaagc |
211 |
Q |
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| T |
50254862 |
tttactcttattcatactagatacaagttgaaactcaaatcgaaaaactggcaccaaggcatcaaaacaagcaatttcctccaatttggtcttatgaagt |
50254763 |
T |
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| Q |
212 |
ccata |
216 |
Q |
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||||| |
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| T |
50254762 |
ccata |
50254758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 27646261 - 27646328
Alignment:
| Q |
1 |
agataatgcaattcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatc |
68 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27646261 |
agataatgcaattcaatgttggtagaagggtatgagtttcatctccctcagcttagccacccagaatc |
27646328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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