View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3462_low_2 (Length: 421)
Name: NF3462_low_2
Description: NF3462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3462_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 40004848 - 40004458
Alignment:
| Q |
20 |
tcaactgcttacagtcgcaccgtatttagtgaagagacagaaccaacatttccatcatctggagcactatggtattgatttaatacttggctgtaatgga |
119 |
Q |
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| T |
40004848 |
tcaactgcttacagtcgcaccgtatttagtgaagagacagaaccaacatttccatcatctggagcactatggtattgatttaatacttggctgtaatgga |
40004749 |
T |
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| Q |
120 |
ttcatatgggtcggagaacatgttgaagccagagatgacatgatagaagatcaaataaaccaatctgatccacaagttttaattcccaataaaaattatg |
219 |
Q |
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| T |
40004748 |
ttcatatgggtcggagaacatgttgaagccagagatgacatgatagaagatcaaataaaccaatctgatccacaagttttaattcccaataaaaattatg |
40004649 |
T |
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| Q |
220 |
tcagtcttgaagaacaagagaaaaactatactgcattggagacaagtgaatacatatgcagggctgctaatgctgttagagtattgtccactttaggatt |
319 |
Q |
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| T |
40004648 |
tcagtcttgaagaacaagag-aaaactatactggactggagacaagtgaatacatatgcagggctgctgatgctgttagagcattgtccactttaggatt |
40004550 |
T |
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| Q |
320 |
cattttaacattggaaatcatcaagggagttattgatctaagcctctctgcgaatcttgatatacacgacatgcttggttccgagttctgtg |
411 |
Q |
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| T |
40004549 |
cattttaacattggaaatcatcaagggagttattgatctaagcctctctacgaatcttgatatacacgacatgcttggttccgagttctgtg |
40004458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 50241937 - 50242328
Alignment:
| Q |
20 |
tcaactgcttacagtcgcaccgtatttagtgaagagacagaaccaacatttccatcatctggagcactatggtattgatttaatacttggctgtaatgga |
119 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||| |
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| T |
50241937 |
tcaactgcttacagtcacaccgtatttagtgaagaggcagaaacaacatttccatcatctagagcagtacggtattgatttaataattggctgtaatggg |
50242036 |
T |
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| Q |
120 |
ttcatatgggtcggagaacatgttgaagccagagatgacatgatagaagatcaaataaaccaatctgatccacaagttttaattcccaataaaaattatg |
219 |
Q |
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||||||||||| || ||||||||||||| ||||||||||||| ||||||||||| | ||||||||||||||||| ||||||| |||||||||||||| || |
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| T |
50242037 |
ttcatatgggttggggaacatgttgaagtcagagatgacatggtagaagatcaagtgaaccaatctgatccacaggttttaactcccaataaaaattctg |
50242136 |
T |
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| Q |
220 |
tcagtcttgaagaacaagagaaaaactatactgcattggagacaagtgaatacatatgcagggctgctaatgctgttagagtattgtccactttaggatt |
319 |
Q |
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| T |
50242137 |
tgagtcttgaagaacaagagaaaaagtacacagcactggagacaagaaagtacatatgcagggctgctaatgctgttagaggattatccactttaggatt |
50242236 |
T |
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| Q |
320 |
cattttaacattggaaatcatcaagggagttattgatctaagcctctctgcgaatcttgatatacacgacatgcttggttccgagttctgtg |
411 |
Q |
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|||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50242237 |
cattataacatcggaaatcatcaagggagttattgatctcagcctttctgcgaatcttgatatacacgacatgcttggttccgagttctgtg |
50242328 |
T |
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