View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3462_low_8 (Length: 269)
Name: NF3462_low_8
Description: NF3462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3462_low_8 |
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| [»] scaffold0386 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 38 - 254
Target Start/End: Original strand, 6069966 - 6070180
Alignment:
| Q |
38 |
aatgttgaatcatatagacgactatcacttgtcgagcttgaacattcctataattcaaaagagaagcatcaaccnnnnnnnnnnnnnnnnggtagaaata |
137 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
6069966 |
aatgttgaatcatatagac---tatcacttgtcgagcttgaacattcctataattcaaaagagaagcatccacctttttctttcttttttggtagaaata |
6070062 |
T |
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| Q |
138 |
a-gcatcaacctaaatgccacaacaaataagatgagctagcttcctacaaatacttctatctctaatcccccaagaattgataccaatttcaagagatgt |
236 |
Q |
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| T |
6070063 |
aagcatcaacctaaatgccacaacaaataagatgagctagcttcctacaaatacttctatctctaatcccccaagaattgataccaatttcaagagatgt |
6070162 |
T |
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| Q |
237 |
catgcaacattgcatgat |
254 |
Q |
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|||||||||||||||||| |
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| T |
6070163 |
catgcaacattgcatgat |
6070180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 38 - 254
Target Start/End: Original strand, 6074496 - 6074707
Alignment:
| Q |
38 |
aatgttgaatcatatagacgactatcacttgtcgagcttgaacattcctataattcaaaagagaagcatcaaccnnnnnnnnnnnnnnnnggtagaaata |
137 |
Q |
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|||||||||||||||| || | |||||||||||| |||||||||||||||||||||||||||||||| |||| ||| |||||| |
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| T |
6074496 |
aatgttgaatcatataaacca---tcacttgtcgagattgaacattcctataattcaaaagagaagcataaacctttttctttcttttttggtcgaaata |
6074592 |
T |
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| Q |
138 |
agcatcaacctaaatgccacaacaaataagatgagctagcttcctacaaatacttctatctctaatcccccaagaattgataccaatttcaagagatgtc |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| ||||||||||||||| |
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| T |
6074593 |
agcatcaacctaaatgccacaacaaataagatgagctagcttcctacaaatacttcca--tctaatcctccaagaattgataccgatttcaagagatgtc |
6074690 |
T |
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| Q |
238 |
atgcaacattgcatgat |
254 |
Q |
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||||||||||||||||| |
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| T |
6074691 |
atgcaacattgcatgat |
6074707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 38 - 254
Target Start/End: Original strand, 1374 - 1585
Alignment:
| Q |
38 |
aatgttgaatcatatagacgactatcacttgtcgagcttgaacattcctataattcaaaagagaagcatcaaccnnnnnnnnnnnnnnnnggtagaaata |
137 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
1374 |
aatgttgaatcatatagaccg---tcacttgtcgagcttgaacattcctataattcaaaagagaagcatcaacctttttctttcttctttagtcgaaata |
1470 |
T |
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| Q |
138 |
agcatcaacctaaatgccacaacaaataagatgagctagcttcctacaaatacttctatctctaatcccccaagaattgataccaatttcaagagatgtc |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| |
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| T |
1471 |
agcatcaacctaaatgccacaacaaataagatgagctagcttcctacaaatacttcca--tctaatcccctaagaattgataccaatttcaagagatgtc |
1568 |
T |
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| Q |
238 |
atgcaacattgcatgat |
254 |
Q |
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||||||||||||||||| |
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| T |
1569 |
atgcaacattgcatgat |
1585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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