View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3462_low_9 (Length: 253)
Name: NF3462_low_9
Description: NF3462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3462_low_9 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 33771071 - 33771306
Alignment:
| Q |
18 |
agaacccgatgataaacacttgtgaacatgtcatttgttacaagctgcaaacaagattgacatatgtaatcattaaaaatcacaaatattaatgtaatgt |
117 |
Q |
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| T |
33771071 |
agaacccgatgataaacacttgtgaacatgtcatttgttacaagctgcaaacaagattgatatatgtaatcattaaaaaacacaaacattaatgtaatgt |
33771170 |
T |
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| Q |
118 |
cacaagaaattaaagtacataaatattgattattttataatttaagtcatcacatttaaaattagttacctgcagaagatcaccaatatttactataaga |
217 |
Q |
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| T |
33771171 |
cacaagaaattaaagtacataaatattgattattttataatttaagtcatcacatttaaaattagttacctgcagaagatcaccaatatttactataaga |
33771270 |
T |
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| Q |
218 |
gatccatgcactggaggaacatcaatccattgattt |
253 |
Q |
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| T |
33771271 |
gatccatgcaccggaggaacatcaatccattgattt |
33771306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 33768273 - 33768331
Alignment:
| Q |
30 |
taaacacttgtgaacatgtcatttgttacaagctgcaaacaagattgacatatgtaatc |
88 |
Q |
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| T |
33768273 |
taaacacttgtgaacatgtcatttgttacaagctgcaaagaaaattgataaatgtaatc |
33768331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 33761674 - 33761778
Alignment:
| Q |
20 |
aacccgatgataaacacttgtgaacatgtcatttgttacaagctgcaaacaagattgacatatg--taatcattaaaaatcacaaatattaatgtaatgt |
117 |
Q |
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| T |
33761674 |
aacccggtgataaacacttgtgaacatgtcatttgttataagctgcaaaggagaatgataaatgtatattcattaaatatcacaactatatatgtcatgt |
33761773 |
T |
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| Q |
118 |
cacaa |
122 |
Q |
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| T |
33761774 |
cacaa |
33761778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 33761803 - 33761872
Alignment:
| Q |
183 |
ttacctgcagaagatcaccaatatttactataagagatccatgcactggaggaacatcaatccattgatt |
252 |
Q |
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| T |
33761803 |
ttacctgcataagatcaccaacgtttacaacaagagatccatgcagtggaggaacatcaacccattgatt |
33761872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 41241214 - 41241155
Alignment:
| Q |
180 |
tagttacctgcagaagatcaccaatatttactataagagatccatgcactggaggaacat |
239 |
Q |
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| T |
41241214 |
tagttacctgtaggatatccccaatatttacaacaagagctccatgcactggaggaacat |
41241155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 2047032 - 2046992
Alignment:
| Q |
183 |
ttacctgcagaagatcaccaatatttactataagagatcca |
223 |
Q |
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| T |
2047032 |
ttacctgcagaagatcaccaacattaactatgagagatcca |
2046992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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