View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3463_low_2 (Length: 272)
Name: NF3463_low_2
Description: NF3463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3463_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 41425781 - 41425543
Alignment:
| Q |
13 |
cagacccaatccctatagacttcactacaagggcacatgttaggacattgcgccgtcaatggaccaaatcatatccctctagtagccaatcactgcatga |
112 |
Q |
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| T |
41425781 |
cagacccaatccctatagacttcactacaagggcacaggttaggacgctgcgccgtcaatggaccaaatcatatccctctagtagccaatcactgcatga |
41425682 |
T |
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| Q |
113 |
tcatcgtcagacagtgatccactaatt-gcgttgataatctctcagtaatgcaatgagaaaggtagacaatcaaatataataaatccatcattctactcg |
211 |
Q |
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|||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41425681 |
tcatcgtcag----tgatccactaatttgctttgataatctctcagtaatgcaatgagaaaggtagacaatcaaatataataaatccatcattctactcg |
41425586 |
T |
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| Q |
212 |
acgtcacaatgtttgcagatacatcaccaactctggccgttat |
254 |
Q |
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| T |
41425585 |
acgtcacaatgtttgcagatgcatcaccaactccgaccgttat |
41425543 |
T |
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