View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3464_high_2 (Length: 784)
Name: NF3464_high_2
Description: NF3464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3464_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 671; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 19 - 774
Target Start/End: Complemental strand, 41281138 - 41280368
Alignment:
| Q |
19 |
cactaaaccttatggtgagtttcttcaacataccaccattgtggagagagtgtctctcttcagcatttagaaccgccttagcttgcaccatagtagcagg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41281138 |
cactaaaccttatggtgagtttcttcaacattccaccattgtggagagagtgtctctcttcagcatttagaaccgccttagcttgcaccatagtagctgg |
41281039 |
T |
|
| Q |
119 |
tgcaacactttatggacctatttcaattacaagcctaataacattccctgcattttcatacgtggttgtgattctcattatcataaatgatgctacttta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41281038 |
tgcaacactttatggacctatttcaattacaagcctaataacattccctgcattttcatacgtggttgtgattctcattatcataaatgatgctacttta |
41280939 |
T |
|
| Q |
219 |
ggtgactctctacgtggttgttggctagggctttatgctacaattcaaagtttaggaccagctatgttgagtttatgggctataggtccaaatcatttct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41280938 |
ggtgactctctacgtggttgttggctagggctttatgctacaattcaaagtttaggtccagctatgttgagtttatgggctataggtccaaatcatttct |
41280839 |
T |
|
| Q |
319 |
ctaaaggaactgcttctattgcggtggcattggctgcatttgttgtggttttaccttctcaatcaacacatttgatagctaagagaatttcattgggtca |
418 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41280838 |
ctaaaggaactgcttctattgctgtggcattggctgcatttgttgtggttttaccttctcaatcaacacatttgatagctaagagaatttcattgggtca |
41280739 |
T |
|
| Q |
419 |
gattgtgttggtgtatgtgttggcttattctaatggtgctcatattgatcctattatgcatcctattcatttggctgctagtactgctttaggtgtaatt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41280738 |
gattgtgttggtgtatgtgttggcttattctaatggtgctcatattgatcctattatgcatcctattcatttggctgctagtactgctttaggtgtaatt |
41280639 |
T |
|
| Q |
519 |
gcttgtgtgcttgcattgcttcttccttaccctcgttttgcttgctaccaggtaattttatcattttctttcttgctatgtttagagacattaattacac |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41280638 |
gcttgtgtgcttgcattgcttcttccttaccctcgttttgcttgctaccaggtaattttatcattttctttcttgctatgtttagagacattaattacac |
41280539 |
T |
|
| Q |
619 |
--nnnnnnnatgctcatatgtccatgctatgaaattgtttatattatattaatgtttgtattattcctctaaatacacacac-------------tacta |
703 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41280538 |
tttttttttatgctcatatgtccatgctatgaaattgtttatattatattaatgtttgtattattcctctaaatacacacacacacacactagtatacta |
41280439 |
T |
|
| Q |
704 |
aaatattagaataattgagacacctttgttactctcatgtcttttttgttgttgttgttgtgacttctgtg |
774 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41280438 |
aaatattaaaataattgagacacctttgttactctcgtgtcttttttgttgttgttgttgtgacttctgtg |
41280368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 482 - 521
Target Start/End: Original strand, 38806444 - 38806483
Alignment:
| Q |
482 |
tattcatttggctgctagtactgctttaggtgtaattgct |
521 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
38806444 |
tattcatttggcagctagtactgctttatgtgtaattgct |
38806483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 507 - 615
Target Start/End: Complemental strand, 34981887 - 34981782
Alignment:
| Q |
507 |
ttaggtgtaattgcttgtgtgcttgcattgcttcttccttaccctcgttttgcttgctaccaggtaattttatcattttctttcttgctatgtttagaga |
606 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
34981887 |
ttaggtgtaattgcttgtgtggttgcatt---tcttccttgccctccttttgcttgctaccaggtaattttatcattttctttcatgctatgtttcgaga |
34981791 |
T |
|
| Q |
607 |
cattaatta |
615 |
Q |
| |
|
||||||||| |
|
|
| T |
34981790 |
cattaatta |
34981782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 477 - 525
Target Start/End: Original strand, 34981612 - 34981660
Alignment:
| Q |
477 |
catcctattcatttggctgctagtactgctttaggtgtaattgcttgtg |
525 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||| ||||||||||||||| |
|
|
| T |
34981612 |
catcttattcatttggcagctagtactcctttatgtgtaattgcttgtg |
34981660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 482 - 521
Target Start/End: Original strand, 54185219 - 54185258
Alignment:
| Q |
482 |
tattcatttggctgctagtactgctttaggtgtaattgct |
521 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
54185219 |
tattcatttggcagctagtactgctttatgtgtaattgct |
54185258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 482 - 521
Target Start/End: Original strand, 46636669 - 46636708
Alignment:
| Q |
482 |
tattcatttggctgctagtactgctttaggtgtaattgct |
521 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
46636669 |
tattcatttggcagctagtactgctttatgtgtaattgct |
46636708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 482 - 521
Target Start/End: Complemental strand, 43514833 - 43514794
Alignment:
| Q |
482 |
tattcatttggctgctagtactgctttaggtgtaattgct |
521 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
43514833 |
tattcatttggcagctagtactgctttatgtgtaattgct |
43514794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University