View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3464_high_3 (Length: 416)
Name: NF3464_high_3
Description: NF3464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3464_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 14267104 - 14267489
Alignment:
| Q |
18 |
gtacctaactaagtatttttcctgatttattgaaaattattaggcccgaatatggacttatatagttaggtgaattggtgctttgggagagggatatatt |
117 |
Q |
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| T |
14267104 |
gtacctaactaagtatttttcctaatttattgaaaattattaggcccgaatatggacttatatagttaggtgaattggtgctttgggagagggatatatt |
14267203 |
T |
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| Q |
118 |
aaggattgaagtggtaaaagaggttgtgagtttaactctcatcacttacatacgaacaactgatatttattatcaaaatatcttatcgtgaatgttaaga |
217 |
Q |
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| T |
14267204 |
aaggattgaagtggtaaaagaggttgtgagtttaactctcatcactgacaaactaaca-ctaatatttattatcaaaatatctcatcgtaaatgttaaga |
14267302 |
T |
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| Q |
218 |
atatattattacacatgtgaaaattaaaagagagatcgaaaggcatcacaacttttccatgtaacaagttatacataaatttatactataaacccaaaat |
317 |
Q |
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| T |
14267303 |
atatattattacacatgtgaaaattaaaagagagatcgaaaggcatcacaacttttccatgtaacaagttatgcataaatttatactataaacccaaaat |
14267402 |
T |
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| Q |
318 |
gaggaggatgactccctatgatcctgtatgtatgtgtaagtatggcaacggtgtgaagacaagtttttcctctcttatcctcacctttg |
406 |
Q |
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| T |
14267403 |
gaggtgaatgactctctatgatcctgtatgta--tgtaagtatggcaacggtgtgaagacaagtttttcctctcttatcctcacctttg |
14267489 |
T |
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