View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3464_high_4 (Length: 334)
Name: NF3464_high_4
Description: NF3464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3464_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 22895987 - 22895729
Alignment:
| Q |
11 |
cacagactcttactcctaatcagtcactggctactagcactacaccaaaaatgggttttagcatcagcggaaaaataagacacaataaagaagaaaataa |
110 |
Q |
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| T |
22895987 |
cacacactcttactcctaatcactcaccgactactagcactgcaccaaaaatgggttttagcatcagcggaaaaataagacacaataaagaagaaaataa |
22895888 |
T |
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| Q |
111 |
atatataaagagggagtgaagaatagaactaagggtttagaagggagagaaaatgaactttagaaatccaccaccatcatccacccttcatc-atcatcg |
209 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22895887 |
atatataaagagggagcgaagaatagaaataagggtttagaagggagagaaa--gaactttagaaatccaccaccatcatccacccttcatcgatcatcg |
22895790 |
T |
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| Q |
210 |
agcatcaccattttaagaaatttggctattcatcgaaaatcataatcttctccatattttt |
270 |
Q |
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|||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
22895789 |
agcatcacaattttaaaaaatttggcctttcatcgaaaggcataatcttctccatattttt |
22895729 |
T |
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