View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3464_high_5 (Length: 314)
Name: NF3464_high_5
Description: NF3464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3464_high_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 19789916 - 19789689
Alignment:
| Q |
16 |
acatttcaacatactttgggtttcctttcgattcagaagtcttattttaaatcttttgcacttgcagactggtctttcagtttatgctcatcaagggcaa |
115 |
Q |
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| T |
19789916 |
acatttcaacatactt-gggtttcctttctattcagaagtcttattttaaaccttttgcacttgcagactggtctttcagtttatgctcatcaagggcaa |
19789818 |
T |
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| Q |
116 |
gtgagtccaaaggatattgaattctgtcgaaatcgtagtcctgacacaacaaaattagaccttgagacacccaccatcagcagtttttcagccaagtcat |
215 |
Q |
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| T |
19789817 |
gtgagtccaaaggatattgaattctgtcgaaatcgtagtcctgacacaacaaaattagaccttgagacacccaccatcagcagtttttcagccaagtcat |
19789718 |
T |
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| Q |
216 |
tgtgtatttttcatgttctcaattggcaa |
244 |
Q |
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| T |
19789717 |
tgtgtatttttcatgttctcaattggcaa |
19789689 |
T |
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Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 241 - 314
Target Start/End: Complemental strand, 19789527 - 19789454
Alignment:
| Q |
241 |
gcaataacttctctgttttcctagataactgtatcaattgcagcagcaaattgatgtcattagaaataagaaac |
314 |
Q |
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| T |
19789527 |
gcaataacttctctgttttcctagataactgtatcaattgcagcagcaaattgatttcattagaaataagaaac |
19789454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 241 - 314
Target Start/End: Original strand, 39115521 - 39115594
Alignment:
| Q |
241 |
gcaataacttctctgttttcctagataactgtatcaattgcagcagcaaattgatgtcattagaaataagaaac |
314 |
Q |
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| T |
39115521 |
gcaataacttctctgttttcctagataactgtatcaattgcagcagctacttgatttcattagaaataagaaac |
39115594 |
T |
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