View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3464_high_8 (Length: 251)
Name: NF3464_high_8
Description: NF3464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3464_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 47377539 - 47377299
Alignment:
| Q |
1 |
acaaattgaaagaaatttggtttgacgatagccacacctagtcatgtactgcatccatgctcgaacacccgctcgtttattttaaaaagatgannnnnnn |
100 |
Q |
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| T |
47377539 |
acaaattgaaagaaatttggtttgacgatagccacacctagtcatgtactgcatccatgctcgaacacccgcttgtttattttaaaaagatgattttttt |
47377440 |
T |
|
| Q |
101 |
n-agtgagcagactacttgnnnnnnnnntagttattgactcannnnnnnnagaagaatgtgtaagatcaactagtttgtgaagagaatttcatatgtaaa |
199 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47377439 |
ttagtgagcagactacttgaaaaaaaa-tagttattgactcattttttttagaagaatgtgtaagatcaactagtttgtgaagagaatttcatatgtaaa |
47377341 |
T |
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| Q |
200 |
ataattttagagaataatatatcatcacacaccttacctttg |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
47377340 |
ataattttagagaataatatatcatcacacaccttacctttg |
47377299 |
T |
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