View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3464_low_6 (Length: 291)
Name: NF3464_low_6
Description: NF3464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3464_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 35744161 - 35743900
Alignment:
| Q |
19 |
atgaggatgatcatcatcaaaaaatggttaaacatgatcaagttatggaagaagtggagttaccactatctcctaaacaatttcaaccaaattctcctaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744161 |
atgaggatgatcatcatcaaaaaatggttaaacatgatcaagttatggaagaagtggagttaccactatctcctaaacaatttcaaccaaattctcctaa |
35744062 |
T |
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| Q |
119 |
accaacacaaacaccttctcatctgcaacaagcatcaatgtctatttcttcatcttctcccccaccccctcctcccctacctgcaccattcacgataatg |
218 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
35744061 |
accaacacaaacaccttctcatctacaacaagcatcaatgtctatttcttcatcttctcccccaccccctcctcccctacctgcaccattc---atgatg |
35743965 |
T |
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| Q |
219 |
ccnnnnnnngtacagatattaccaccctcggcacctccaccaccaccgcctccgccacctatgct |
283 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35743964 |
ccaaaaaaagtacagatattaccaccctcggcacctccaccaccaccgcctccgccacctatgct |
35743900 |
T |
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