View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3465_high_2 (Length: 403)

Name: NF3465_high_2
Description: NF3465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3465_high_2
NF3465_high_2
[»] chr3 (10 HSPs)
chr3 (126-226)||(8544245-8544345)
chr3 (142-282)||(27987550-27987686)
chr3 (126-225)||(8547714-8547813)
chr3 (127-282)||(28520691-28520841)
chr3 (275-358)||(8544002-8544085)
chr3 (275-358)||(8547470-8547553)
chr3 (36-132)||(30648339-30648434)
chr3 (313-355)||(27904448-27904490)
chr3 (212-275)||(28478032-28478091)
chr3 (320-358)||(28520557-28520595)
[»] chr1 (1 HSPs)
chr1 (27-128)||(8989967-8990067)
[»] chr4 (2 HSPs)
chr4 (33-128)||(12842028-12842124)
chr4 (27-117)||(21513023-21513112)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 8544345 - 8544245
Alignment:
Q  126 gtaatactttattaagaaaaaattagtatctaacttcagaattttcgaggatttgtaaaatataatttttcaggtgtaaaatagtagaaaattgtgcctt 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8544345 gtaatactttattaagaaaaaattagtatctaacttcagaattttcgaggatttgtaaaatataatttttcaggtgtaaaatagtagaaaattgtgcctt 8544246  T
Q  226 g 226  Q
    |    
T  8544245 g 8544245  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 142 - 282
Target Start/End: Original strand, 27987550 - 27987686
Alignment:
Q  142 aaaaaattagtatctaacttcagaattttcgaggatttgtaaaatataatttttcaggtgtaaaatagtagaaaattgtgccttgcttgcatagctatat 241  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  27987550 aaaaatttagtatctaatttcagaattttcgaggatttgtaaaatataatttttcaggtgtaaaatagtagaaaattgtgccttgcttgcttagctatag 27987649  T
Q  242 acatctatcatgaatcattcaccactcaatgaatatacttt 282  Q
        |||||||| |||||||| |||||||||||| ||||||    
T  27987650 ----ctatcatgcatcattcatcactcaatgaatgtacttt 27987686  T

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Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 8547813 - 8547714
Alignment:
Q  126 gtaatactttattaagaaaaaattagtatctaacttcagaattttcgaggatttgtaaaatataatttttcaggtgtaaaatagtagaaaattgtgcctt 225  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8547813 gtaatactttattaagaaaaagttagtatctaacttcagaattttcgaggatttgtaaaatatgatttttcaggtgtaaaatagtagaaaattgtgcctt 8547714  T

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Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 127 - 282
Target Start/End: Complemental strand, 28520841 - 28520691
Alignment:
Q  127 taatactttattaagaaaaaattagtatctaacttcagaattttcgaggatttgtaaaatataatttttcaggtgtaaaatagtagaaaattgtgccttg 226  Q
    |||||||||||||| ||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  28520841 taatactttattaaaaaaaaataa-tatctaagttcagaattttcgaggatttgtaagatataatttttcaggtgtaaaatagtagaaaatggtgccttg 28520743  T
Q  227 cttgcatagctatatacatctatcatgaatcattcaccactcaatgaatatacttt 282  Q
    ||||| |||    ||| |||||| ||| |||||||| |||||||||||| ||||||    
T  28520742 cttgcttag----atatatctatgatgcatcattcatcactcaatgaatgtacttt 28520691  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 275 - 358
Target Start/End: Complemental strand, 8544085 - 8544002
Alignment:
Q  275 tatactttactttattcgattgcttcttcnnnnnnncttttggactataaataaatttgtcactaaaacacaaatgagttgggt 358  Q
    ||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8544085 tatactttactttattcgattgcttctactgtttttcttttggactataaataaatttgtcactaaaacacaaatgagttgggt 8544002  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 275 - 358
Target Start/End: Complemental strand, 8547553 - 8547470
Alignment:
Q  275 tatactttactttattcgattgcttcttcnnnnnnncttttggactataaataaatttgtcactaaaacacaaatgagttgggt 358  Q
    ||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547553 tatactttactttattcgattgcttctactgtttttcttttggactataaataaatttgtcactaaaacacaaatgagttgggt 8547470  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 132
Target Start/End: Original strand, 30648339 - 30648434
Alignment:
Q  36 aatggatagtaaggaatagtttagtagaaatagttgaagtagtgaaaatggaatttgtagagaacttgaattatattaacttaaacaagagtaatac 132  Q
    |||| |||||||| | |||||| |||||||||||| || |||| ||||  |||| | | || ||| |||||||||||||||||||||| ||||||||    
T  30648339 aatgtatagtaagaattagtttggtagaaatagttaaa-tagttaaaaaagaatctatggaaaacctgaattatattaacttaaacaaaagtaatac 30648434  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 27904448 - 27904490
Alignment:
Q  313 tttggactataaataaatttgtcactaaaacacaaatgagttg 355  Q
    ||||||||| ||||||||||||| ||| |||||||||||||||    
T  27904448 tttggactaaaaataaatttgtcgctacaacacaaatgagttg 27904490  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 28478091 - 28478032
Alignment:
Q  212 gaaaattgtgccttgcttgcatagctatatacatctatcatgaatcattcaccactcaatgaat 275  Q
    |||| |||||||||||||||||||||||    |||||||||  |||||||| ||||||||||||    
T  28478091 gaaatttgtgccttgcttgcatagctat----atctatcatatatcattcatcactcaatgaat 28478032  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 28520595 - 28520557
Alignment:
Q  320 tataaataaatttgtcactaaaacacaaatgagttgggt 358  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  28520595 tataaataaatttgtctctacaacacaaatgagttgggt 28520557  T

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Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 8990067 - 8989967
Alignment:
Q  27 tattttagaaatggatagtaaggaatagtttagtagaaatagttgaagtagtgaaaatggaatttgtagagaacttgaattatattaacttaaacaagag 126  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| |||||    
T  8990067 tattttagaaatggatagtaaggattagtttagtagaaatagttgaagtagtgaaaatagaatttgtggag-acttgaattatattaacttaaataagag 8989969  T
Q  127 ta 128  Q
    ||    
T  8989968 ta 8989967  T

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Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 12842028 - 12842124
Alignment:
Q  33 agaaatggatagtaaggaatagtttagtagaaatagttgaagtagtgaaaatggaatttgtagagaactt-gaattatattaacttaaacaagagta 128  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| ||||||||||    
T  12842028 agaaatggatagtaaggattagtttagtaaaaatagttgaagtagtgaaaatggaatttgtggataacttggaattatattaacttgaacaagagta 12842124  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 21513023 - 21513112
Alignment:
Q  27 tattttagaaatggatagtaaggaatagtttagtagaaatagttgaagtagtgaaaatggaatttgtagagaacttgaattatattaactt 117  Q
    ||||||| ||||||| |||||| | || |||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| ||||||    
T  21513023 tattttataaatggacagtaagaattattttagtagaaatagttgaagtagtaaaaatggaa-ttgtggagaacttgaattataataactt 21513112  T

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