View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3465_high_5 (Length: 226)
Name: NF3465_high_5
Description: NF3465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3465_high_5 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 180882 - 181107
Alignment:
| Q |
1 |
tcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctctattaccctccctacccccaatatt |
100 |
Q |
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| T |
180882 |
tcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaatatttcacatgttggctctattaccctccctaccccaaatatt |
180981 |
T |
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| Q |
101 |
actttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacatatcttgaatttc |
200 |
Q |
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| T |
180982 |
actttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacatatcttgaattgc |
181081 |
T |
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| Q |
201 |
accctacctttttctgtgtgaaggat |
226 |
Q |
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| T |
181082 |
accctacctttttctgtgtgaaggat |
181107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 1701310 - 1701534
Alignment:
| Q |
2 |
cactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctctattaccctccctacccccaatatta |
101 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1701310 |
cactccgaatatgacggtccagaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctctattaccctccctacccccaatacta |
1701409 |
T |
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| Q |
102 |
ctttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacatatcttgaatttca |
201 |
Q |
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| T |
1701410 |
ctttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacatatcttgaatttca |
1701509 |
T |
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| Q |
202 |
ccctacctttttctgtgtgaaggat |
226 |
Q |
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| T |
1701510 |
ccctacctttttctgtgtaaaggat |
1701534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 5400055 - 5400124
Alignment:
| Q |
8 |
gaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctcta |
77 |
Q |
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| T |
5400055 |
gaatatgatggtcccgaggaagttcaaattggtgatggtacaggtttaaaaatttctcatgttggctcta |
5400124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 3541052 - 3541121
Alignment:
| Q |
8 |
gaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctcta |
77 |
Q |
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| T |
3541052 |
gaatatgatggtccagaggaagttcaaattggtgatggtacaggtttaaaaatttctcatgttggctcta |
3541121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 26593124 - 26593053
Alignment:
| Q |
1 |
tcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttgg |
72 |
Q |
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|||||| ||||||||||| || |||||||| || ||||||||||||||||||||||||||||| |||||||| |
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| T |
26593124 |
tcactctgaatatgatggcccagaagaagtgcaaattggtgatggtacaggtttgaaaatttcccatgttgg |
26593053 |
T |
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