View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3465_low_3 (Length: 259)

Name: NF3465_low_3
Description: NF3465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3465_low_3
NF3465_low_3
[»] scaffold0517 (1 HSPs)
scaffold0517 (37-254)||(3833-4050)
[»] chr6 (20 HSPs)
chr6 (37-254)||(22702974-22703191)
chr6 (37-241)||(22697798-22698002)
chr6 (37-254)||(21402011-21402228)
chr6 (37-181)||(29490838-29490982)
chr6 (37-158)||(2817427-2817548)
chr6 (37-158)||(34142781-34142902)
chr6 (37-158)||(34155397-34155518)
chr6 (37-158)||(6727803-6727924)
chr6 (37-158)||(34376464-34376585)
chr6 (37-158)||(24190680-24190802)
chr6 (37-158)||(31983475-31983596)
chr6 (169-241)||(31981832-31981904)
chr6 (169-241)||(34376198-34376270)
chr6 (169-241)||(2817901-2817973)
chr6 (169-241)||(24191126-24191198)
chr6 (169-241)||(24192223-24192295)
chr6 (181-241)||(34142358-34142418)
chr6 (181-241)||(34154974-34155034)
chr6 (201-254)||(29491008-29491061)
chr6 (169-231)||(6728193-6728255)
[»] chr5 (19 HSPs)
chr5 (37-254)||(17510328-17510545)
chr5 (37-254)||(42019843-42020060)
chr5 (37-254)||(17505223-17505440)
chr5 (37-254)||(42024623-42024840)
chr5 (37-254)||(43579930-43580147)
chr5 (37-249)||(41858861-41859071)
chr5 (37-147)||(41853846-41853956)
chr5 (38-158)||(1413100-1413220)
chr5 (37-158)||(36254517-36254638)
chr5 (37-158)||(24770631-24770752)
chr5 (42-134)||(26709712-26709804)
chr5 (42-134)||(26979446-26979538)
chr5 (68-158)||(24776116-24776206)
chr5 (169-241)||(24776563-24776635)
chr5 (169-241)||(1413806-1413878)
chr5 (169-241)||(24771108-24771180)
chr5 (169-241)||(26709372-26709444)
chr5 (169-241)||(26979106-26979178)
chr5 (169-241)||(36254105-36254177)
[»] chr4 (28 HSPs)
chr4 (37-254)||(8985013-8985230)
chr4 (37-254)||(13700780-13700997)
chr4 (37-254)||(21299441-21299658)
chr4 (37-254)||(21304561-21304778)
chr4 (37-254)||(54991746-54991963)
chr4 (37-254)||(8979893-8980110)
chr4 (37-254)||(54990418-54990635)
chr4 (37-241)||(39999405-39999609)
chr4 (37-241)||(40004363-40004567)
chr4 (37-241)||(54343539-54343743)
chr4 (37-241)||(54348693-54348897)
chr4 (37-241)||(36359664-36359868)
chr4 (37-241)||(36354478-36354682)
chr4 (37-158)||(53798329-53798450)
chr4 (37-158)||(41393858-41393979)
chr4 (37-158)||(51018732-51018853)
chr4 (37-158)||(9763299-9763420)
chr4 (37-158)||(13695757-13695878)
chr4 (37-158)||(13711370-13711491)
chr4 (37-158)||(4207042-4207162)
chr4 (38-158)||(47045647-47045767)
chr4 (169-241)||(13695431-13695503)
chr4 (169-241)||(9763771-9763843)
chr4 (169-241)||(41393512-41393584)
chr4 (169-241)||(53797898-53797970)
chr4 (159-241)||(51019117-51019199)
chr4 (169-241)||(13710938-13711010)
chr4 (169-241)||(47046060-47046132)
[»] chr1 (15 HSPs)
chr1 (37-254)||(27711593-27711810)
chr1 (37-254)||(37404026-37404243)
chr1 (37-254)||(37409145-37409362)
chr1 (37-241)||(36684270-36684474)
chr1 (37-240)||(34317840-34318043)
chr1 (37-254)||(11250731-11250948)
chr1 (37-254)||(27716713-27716930)
chr1 (37-158)||(5725365-5725486)
chr1 (37-158)||(3585301-3585422)
chr1 (38-158)||(5730771-5730891)
chr1 (37-158)||(48245998-48246119)
chr1 (37-96)||(50959010-50959069)
chr1 (169-241)||(5730374-5730446)
chr1 (169-241)||(3584870-3584942)
chr1 (159-241)||(48246427-48246509)
[»] chr3 (23 HSPs)
chr3 (37-254)||(55129060-55129276)
chr3 (44-254)||(17368989-17369199)
chr3 (37-241)||(15762585-15762789)
chr3 (37-241)||(15767746-15767950)
chr3 (37-241)||(20090217-20090421)
chr3 (37-241)||(20095342-20095546)
chr3 (37-158)||(3481675-3481796)
chr3 (37-158)||(34128437-34128558)
chr3 (37-158)||(17358566-17358686)
chr3 (37-158)||(30338126-30338247)
chr3 (37-158)||(30341230-30341351)
chr3 (37-158)||(54271312-54271433)
chr3 (68-158)||(3476249-3476339)
chr3 (68-158)||(4117007-4117097)
chr3 (169-241)||(17358107-17358179)
chr3 (169-241)||(54270914-54270986)
chr3 (169-241)||(3482166-3482238)
chr3 (169-241)||(4117345-4117417)
chr3 (169-241)||(30338506-30338578)
chr3 (169-241)||(34128923-34128995)
chr3 (169-241)||(3476699-3476771)
chr3 (169-241)||(10321712-10321784)
chr3 (194-239)||(10321816-10321861)
[»] chr7 (29 HSPs)
chr7 (37-241)||(33238338-33238542)
chr7 (37-241)||(47994136-47994340)
chr7 (37-241)||(33243515-33243719)
chr7 (37-241)||(47999311-47999515)
chr7 (37-158)||(2233978-2234099)
chr7 (37-158)||(21080347-21080468)
chr7 (37-158)||(19308902-19309023)
chr7 (37-158)||(17496100-17496221)
chr7 (37-158)||(17556993-17557114)
chr7 (37-158)||(32211991-32212112)
chr7 (37-158)||(42572600-42572721)
chr7 (37-158)||(12935084-12935205)
chr7 (37-158)||(47176522-47176643)
chr7 (37-151)||(16538699-16538813)
chr7 (37-151)||(16626849-16626963)
chr7 (37-158)||(43893542-43893663)
chr7 (169-241)||(2234384-2234456)
chr7 (37-90)||(47544775-47544828)
chr7 (169-241)||(12934666-12934738)
chr7 (169-241)||(17495672-17495744)
chr7 (169-241)||(17557470-17557542)
chr7 (169-241)||(19309365-19309437)
chr7 (169-241)||(21080793-21080865)
chr7 (169-241)||(42572214-42572286)
chr7 (169-241)||(43893138-43893210)
chr7 (169-241)||(16539166-16539238)
chr7 (169-241)||(16626424-16626496)
chr7 (169-241)||(47176904-47176976)
chr7 (181-241)||(32212419-32212479)
[»] scaffold0055 (1 HSPs)
scaffold0055 (37-241)||(3360-3564)
[»] scaffold0052 (1 HSPs)
scaffold0052 (37-241)||(80971-81175)
[»] chr8 (18 HSPs)
chr8 (37-241)||(32010862-32011066)
chr8 (37-241)||(32016036-32016240)
chr8 (38-254)||(2165421-2165638)
chr8 (37-158)||(43998572-43998693)
chr8 (41-158)||(17955164-17955281)
chr8 (37-158)||(24885324-24885445)
chr8 (37-158)||(42513874-42513995)
chr8 (68-158)||(21641184-21641273)
chr8 (159-241)||(24884982-24885064)
chr8 (169-241)||(21643835-21643907)
chr8 (169-241)||(21643020-21643092)
chr8 (169-241)||(21643395-21643467)
chr8 (169-241)||(43998984-43999056)
chr8 (177-240)||(42514182-42514245)
chr8 (169-241)||(21641520-21641592)
chr8 (169-241)||(21641895-21641967)
chr8 (169-241)||(21642270-21642342)
chr8 (169-241)||(21642645-21642717)
[»] chr2 (12 HSPs)
chr2 (37-241)||(42728175-42728379)
chr2 (37-241)||(44096638-44096842)
chr2 (38-241)||(42723007-42723210)
chr2 (37-254)||(40392589-40392806)
chr2 (37-231)||(44754161-44754355)
chr2 (37-231)||(44759327-44759521)
chr2 (37-254)||(40518075-40518297)
chr2 (40-232)||(40519925-40520122)
chr2 (37-158)||(4162921-4163042)
chr2 (37-158)||(28751047-28751168)
chr2 (169-241)||(4163331-4163403)
chr2 (169-241)||(28751483-28751555)
[»] scaffold0014 (2 HSPs)
scaffold0014 (37-241)||(31881-32085)
scaffold0014 (37-241)||(26709-26913)
[»] scaffold0594 (2 HSPs)
scaffold0594 (37-158)||(8560-8681)
scaffold0594 (169-241)||(8962-9034)
[»] scaffold0166 (4 HSPs)
scaffold0166 (37-158)||(13012-13133)
scaffold0166 (68-158)||(18500-18590)
scaffold0166 (169-241)||(18946-19018)
scaffold0166 (169-241)||(13493-13565)
[»] scaffold0060 (2 HSPs)
scaffold0060 (159-241)||(37279-37361)
scaffold0060 (100-158)||(37654-37712)


Alignment Details
Target: scaffold0517 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 4050 - 3833
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4050 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 3951  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3950 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 3851  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  3850 ttctctcctctcttctcc 3833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 37 - 254
Target Start/End: Original strand, 22702974 - 22703191
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22702974 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 22703073  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22703074 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 22703173  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  22703174 ttctctcctctcttctcc 22703191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 37 - 241
Target Start/End: Original strand, 22697798 - 22698002
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22697798 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 22697897  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22697898 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 22697997  T
Q  237 ttctc 241  Q
    |||||    
T  22697998 ttctc 22698002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 21402228 - 21402011
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21402228 cttggagtatagtagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 21402129  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| |||||| |||||||||||||||||| |||||    
T  21402128 ggtagatcacacactctagtagaaatcctccttataaattgagagcttgggaatagtattcatcactcaaaaactaagaatcgaatactcttctttggtt 21402029  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  21402028 ttctctcctctcttctcc 21402011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 29490838 - 29490982
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29490838 cttggagtatactagtgagtttgtggagcttttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 29490937  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagag 181  Q
    | |||||||||||||||||||||||||||||||||||||||||||    
T  29490938 ggtagatcacacactctagtagaaatcctccttataaattgagag 29490982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 2817427 - 2817548
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |    
T  2817427 cttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaatttaatgtcccacattg 2817526  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  2817527 ggtagatcacacactctagtag 2817548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 34142902 - 34142781
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  34142902 cttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 34142803  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  34142802 ggtagatcacacactctagtag 34142781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 34155518 - 34155397
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  34155518 cttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 34155419  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  34155418 ggtagatcacacactctagtag 34155397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 6727803 - 6727924
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| |||||| |    
T  6727803 cttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaagtgtgaattgaaaattttatgttccacattg 6727902  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  6727903 ggtagatcacacactctagtag 6727924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 34376585 - 34376464
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  34376585 cttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 34376486  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||| ||||||||||||||    
T  34376485 ggtagataacacactctagtag 34376464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 24190680 - 24190802
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaa-ttatatgtcccacatc 135  Q
    ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||| || ||||||||||||     
T  24190680 cttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaagtgtgaattgaaaatttttatgtcccacatt 24190779  T
Q  136 ggatagatcacacactctagtag 158  Q
    || ||||||||||||||||||||    
T  24190780 gggtagatcacacactctagtag 24190802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 31983596 - 31983475
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| |||||||| ||| |    
T  31983596 cttggagtatactagtttttatgaggagacattggaatgtaaacacaatgatgtagaaattagtgtaaagtgtgaattgaaaattttatgtcccgcattg 31983497  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  31983496 ggtagatcacacactctagtag 31983475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 31981904 - 31981832
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  31981904 tataaatagagagctcgggattggtattcttcactccaaaaccgagaatcgaatactcttctctggttttctc 31981832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 34376270 - 34376198
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  34376270 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 34376198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 2817901 - 2817973
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| ||||||||||||||   |||||||||||||||||  |||||||||| ||||||||||||||||||    
T  2817901 tataaatagagagctcgggaatgagattctttactccaaaaccaagaatcgaatcctcttctctggttttctc 2817973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 24191126 - 24191198
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| ||||||||||  |||||||||| ||||||||||||||||||    
T  24191126 tataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctc 24191198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 24192223 - 24192295
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| ||||||||||  |||||||||| ||||||||||||||||||    
T  24192223 tataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctc 24192295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 34142418 - 34142358
Alignment:
Q  181 gctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    |||||||||| | |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  34142418 gctcgggaattggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 34142358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 34155034 - 34154974
Alignment:
Q  181 gctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    |||||||||| | |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  34155034 gctcgggaattggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 34154974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 29491008 - 29491061
Alignment:
Q  201 actccaaaactgagaatcgaatactcttctctggttttctctcctctctgctcc 254  Q
    |||||||||||||||||| |||||||||||||| |||| |||||||||| ||||    
T  29491008 actccaaaactgagaatcaaatactcttctctgattttatctcctctcttctcc 29491061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 6728193 - 6728255
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctc 231  Q
    ||||||| |||||||||||||| | |||||| |||||||||| ||||||||||| | ||||||    
T  6728193 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatccccttctc 6728255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 17510545 - 17510328
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17510545 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 17510446  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17510445 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 17510346  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  17510345 ttctctcctctcttctcc 17510328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 42020060 - 42019843
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  42020060 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactaatgtaaaatgtgaattgaaaattttatgtcccacatcg 42019961  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42019960 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 42019861  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  42019860 ttctctcctctcttctcc 42019843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 17505440 - 17505223
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||    
T  17505440 cttggaatatactagtgagtttgtggagcctttggaatgtaaacacaaggatggaaaaactattgtaaagtgtgaattgaaaattttatgtcccacatcg 17505341  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17505340 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 17505241  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  17505240 ttctctcctctcttctcc 17505223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 42024840 - 42024623
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  42024840 cttgaagtatactagtgagtttgtggagcctttggaatgtaaacataaggatggagaaactagtgtaaaatgtgaattgaaaattttatgtcccacatcg 42024741  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  42024740 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaattgagaatcgaatactcttctctggtt 42024641  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  42024640 ttctctcctctcttctcc 42024623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 43580147 - 43579930
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43580147 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 43580048  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| ||    
T  43580047 ggtagatcacatactctagtagaaatcctccttataaattgagagctcgggaatagtatttttcacaccaaaactgagaatcgaatactcttctctgatt 43579948  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  43579947 ttctctcctctcttctcc 43579930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 37 - 249
Target Start/End: Complemental strand, 41859071 - 41858861
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||    
T  41859071 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggaaaaattagtgtaaagtgtgaattgaaaattctatgtcccacatcg 41858972  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | |||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41858971 ggtagat--cacactctagtagaaattctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 41858874  T
Q  237 ttctctcctctct 249  Q
    |||||| ||||||    
T  41858873 ttctcttctctct 41858861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 41853956 - 41853846
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41853956 cttggagtatactagggagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattctatgtcccacatcg 41853857  T
Q  137 gatagatcaca 147  Q
    | |||||||||    
T  41853856 ggtagatcaca 41853846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 38 - 158
Target Start/End: Original strand, 1413100 - 1413220
Alignment:
Q  38 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcgg 137  Q
    |||||||||||||||   | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |     
T  1413100 ttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatgaagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattga 1413199  T
Q  138 atagatcacacactctagtag 158  Q
     ||||||||||||||||||||    
T  1413200 gtagatcacacactctagtag 1413220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 36254638 - 36254517
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | ||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||| |    
T  36254638 cttggagtatactagttgttatgtggagacattggaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgttccacattg 36254539  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  36254538 ggtagatcacacactctagtag 36254517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 24770631 - 24770752
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  24770631 cttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 24770730  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  24770731 ggtagatcacacactctagtag 24770752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 26709804 - 26709712
Alignment:
Q  42 agtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacat 134  Q
    |||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26709804 agtatactagttggtttgtggagcctatggaatgtaaacacaagaatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacat 26709712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 26979538 - 26979446
Alignment:
Q  42 agtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacat 134  Q
    |||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26979538 agtatactagttggtttgtggagcctatggaatgtaaacacaagaatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacat 26979446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 24776116 - 24776206
Alignment:
Q  68 ttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcggatagatcacacactctagtag 158  Q
    ||||||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  24776116 ttggaatgtaaacacaatgatgtagaaactagtataaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 24776206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 24776563 - 24776635
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||| ||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24776563 tataaatagagagctcaggattggtattctttactccaaaaccgagaatcgaatactcttctctggttttctc 24776635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 1413806 - 1413878
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| |||||||||| ||||||||||| ||||| ||||||||||||    
T  1413806 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttatctggttttctc 1413878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 24771108 - 24771180
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||| ||| | |||||||||||||||||||  |||||| || |||||||||||||||||||    
T  24771108 tataaatagagagctcaggattggtattctttactccaaaaccaagaatcaaacactcttctctggttttctc 24771180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 26709444 - 26709372
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||| | | |||||| ||||||||||||||||| |||| ||||||| ||||||||||    
T  26709444 tataaatagagagctcgggatttgcattcttcactccaaaactgagaattgaatcctcttctttggttttctc 26709372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 26979178 - 26979106
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||| | | |||||| ||||||||||||||||| |||| ||||||| ||||||||||    
T  26979178 tataaatagagagctcgggatttgcattcttcactccaaaactgagaattgaatcctcttctttggttttctc 26979106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 36254177 - 36254105
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| ||||||| |||||| | |||||| |||||||||| ||||||||||| ||||||||| ||||||||    
T  36254177 tataaatagagagcttgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctagttttctc 36254105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 37 - 254
Target Start/End: Original strand, 8985013 - 8985230
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8985013 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 8985112  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8985113 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 8985212  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  8985213 ttctctcctctcttctcc 8985230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 13700997 - 13700780
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13700997 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 13700898  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13700897 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 13700798  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  13700797 ttctctcctctcttctcc 13700780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 37 - 254
Target Start/End: Original strand, 21299441 - 21299658
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  21299441 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatgaagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 21299540  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21299541 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 21299640  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  21299641 ttctctcctctcttctcc 21299658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 37 - 254
Target Start/End: Original strand, 21304561 - 21304778
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21304561 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 21304660  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21304661 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 21304760  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  21304761 ttctctcctctcttctcc 21304778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 54991963 - 54991746
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54991963 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 54991864  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  54991863 gatagatcacacactctagtagaaatcctccttataaattgaaagctcgggaatagtattcttcacttcaaaactgagaatcgaatactcttctctggtt 54991764  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  54991763 ttctctcctctcttctcc 54991746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 37 - 254
Target Start/End: Original strand, 8979893 - 8980110
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  8979893 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccatatcg 8979992  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8979993 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgagaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 8980092  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  8980093 ttctctcctctcttctcc 8980110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 37 - 254
Target Start/End: Original strand, 54990418 - 54990635
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54990418 cttggagtatactagtgagtttgtggagcctttggaatgttaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 54990517  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |||    
T  54990518 gatagatcacacactctagtagaaattctccttataaattgagagctcgggtatagtattcttcactccaaaactgagaatcaaatactcttctcttgtt 54990617  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  54990618 ttctctcctctctactcc 54990635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 39999609 - 39999405
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39999609 cttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 39999510  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39999509 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 39999410  T
Q  237 ttctc 241  Q
    |||||    
T  39999409 ttctc 39999405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 40004567 - 40004363
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40004567 cttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 40004468  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40004467 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 40004368  T
Q  237 ttctc 241  Q
    |||||    
T  40004367 ttctc 40004363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 54343743 - 54343539
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54343743 cttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 54343644  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  54343643 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 54343544  T
Q  237 ttctc 241  Q
    |||||    
T  54343543 ttctc 54343539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 54348897 - 54348693
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54348897 cttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 54348798  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  54348797 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 54348698  T
Q  237 ttctc 241  Q
    |||||    
T  54348697 ttctc 54348693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 36359868 - 36359664
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36359868 cttggagtatactagtgagtttgtggagcctttgaaatgttaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 36359769  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36359768 ggtagatcacacactctagtagaaattctccttataaattgagagctcaggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 36359669  T
Q  237 ttctc 241  Q
    |||||    
T  36359668 ttctc 36359664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 36354682 - 36354478
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36354682 cttggagtatactagtgaatttgtggagcctttggaatgttaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 36354583  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36354582 ggtagatcacacactctagtagaaatcctctttataaattgagagctcagaaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 36354483  T
Q  237 ttctc 241  Q
    |||||    
T  36354482 ttctc 36354478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 53798450 - 53798329
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |    
T  53798450 cttggagtatactagttggtttgtggagcctttggaatgtaaacacaagaatggagaaactagtgtaaagtgtgaattgaaaattttatgtcctacattg 53798351  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  53798350 ggtagatcacacactctagtag 53798329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 41393979 - 41393858
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |    
T  41393979 cttggagtatactagttgttatgtgaagcctttggaatgtaaacacaaggatggaaaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 41393880  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  41393879 ggtagatcacacactctagtag 41393858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 51018732 - 51018853
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    |||||| |||||||||   | ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  51018732 cttggaatatactagttgttatgtggagactttggaatgtacacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 51018831  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  51018832 ggtagatcacacactctagtag 51018853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 9763299 - 9763420
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | ||||||| |||||||||||||||||||||||| ||||||||||||||||  ||||||||||||| |||||||||||| |    
T  9763299 cttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaagcatgaattgaaaattttatgtcccacattg 9763398  T
Q  137 gatagatcacacactctagtag 158  Q
      ||||||||||||||||||||    
T  9763399 agtagatcacacactctagtag 9763420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 13695878 - 13695757
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  13695878 cttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 13695779  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  13695778 ggtagatcacacactctagtag 13695757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 13711491 - 13711370
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  13711491 cttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 13711392  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  13711391 ggtagatcacacactctagtag 13711370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 4207162 - 4207042
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | || |||| | ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  4207162 cttggagtatactagttgttatgaggagacattggaatgtaa-cacaatgatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 4207064  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  4207063 ggtagatcacacactctagtag 4207042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 158
Target Start/End: Original strand, 47045647 - 47045767
Alignment:
Q  38 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcgg 137  Q
    |||||||||||||||   | || |||| | || |||||||||||||| ||   ||||||||||||||||||||||||||||||| |||||||||||| ||    
T  47045647 ttggagtatactagttgttatgaggagacattagaatgtaaacacaatgaaatagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgg 47045746  T
Q  138 atagatcacacactctagtag 158  Q
    |||||||||||||||||||||    
T  47045747 atagatcacacactctagtag 47045767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 13695503 - 13695431
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| |||||||||| ||||||||||||||||||||||||||||||    
T  13695503 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatactcttctctggttttctc 13695431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 9763771 - 9763843
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||| | |||||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  9763771 tataaatagagagctcgggattggtattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 9763843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 41393584 - 41393512
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  41393584 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 41393512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 53797970 - 53797898
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||| ||| |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  53797970 tataaatagagagctcgggattagcattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 53797898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 51019117 - 51019199
Alignment:
Q  159 aaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||||  ||||||| |||| ||||||||| | |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  51019117 aaatcctctctataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 51019199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 13711010 - 13710938
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| ||||||||||  |||||||||| ||||||||||||||||||    
T  13711010 tataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctc 13710938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 47046060 - 47046132
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| |||||||||| |||||||||||  |||||||||||||||||    
T  47046060 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctc 47046132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 27711810 - 27711593
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27711810 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 27711711  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27711710 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 27711611  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  27711610 ttctctcctctcttctcc 27711593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 37 - 254
Target Start/End: Original strand, 37404026 - 37404243
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37404026 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 37404125  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37404126 ggtagatcacacactctagtagaaatcctccttataaattgagagcccgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 37404225  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  37404226 ttctctcctctcttctcc 37404243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 37 - 254
Target Start/End: Original strand, 37409145 - 37409362
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37409145 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 37409244  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37409245 ggtagatcacacactctagtataaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 37409344  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  37409345 ttctctcctctcttctcc 37409362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 37 - 241
Target Start/End: Original strand, 36684270 - 36684474
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36684270 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 36684369  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36684370 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttgactccaaaactgagaatcgaatactcttctctggtt 36684469  T
Q  237 ttctc 241  Q
    |||||    
T  36684470 ttctc 36684474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 34317840 - 34318043
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34317840 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 34317939  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34317940 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 34318039  T
Q  237 ttct 240  Q
    ||||    
T  34318040 ttct 34318043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 37 - 254
Target Start/End: Original strand, 11250731 - 11250948
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11250731 cttggagtataccagtgagtttgtggagtctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 11250830  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11250831 gttagatcacacactctagtagaaatcctccttataaattgagagctcgtgaatagtattctttactccaaaattgagaatcgaatactcttctctggtt 11250930  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  11250931 ttctctcctctcttctcc 11250948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 27716930 - 27716713
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  27716930 cttggagtatactagtgagtttgtggagcctttggaacgtaagcacaaggatggagaaactagtgtaaagtgtgaattgaaatttttatgtcccacatcg 27716831  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  27716830 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgataatcgaatactcttatctggtt 27716731  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  27716730 ttctctcctctcttctcc 27716713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 5725486 - 5725365
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  5725486 cttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 5725387  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  5725386 ggtagatcacacactctagtag 5725365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 3585422 - 3585301
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |    
T  3585422 cttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaaatgtgaattgaaaattttatgtcccacattg 3585323  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  3585322 ggtagatcacacactctagtag 3585301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 5730891 - 5730771
Alignment:
Q  38 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcgg 137  Q
    |||||||||||||||  ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  5730891 ttggagtatactagttggtttgtgaaacctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgg 5730792  T
Q  138 atagatcacacactctagtag 158  Q
     ||||||||||||||||||||    
T  5730791 gtagatcacacactctagtag 5730771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 48245998 - 48246119
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |||||||||||| |    
T  48245998 cttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattaaaatttttatgtcccacattg 48246097  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  48246098 ggtagatcacacactctagtag 48246119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 50959010 - 50959069
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaac 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50959010 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaagaatggagaaac 50959069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 5730446 - 5730374
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||| | | |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  5730446 tataaatagagagctcgggatttgcattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 5730374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 3584942 - 3584870
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||| ||| | | |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  3584942 tataaatagagagctcaggatttgcattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 3584870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 48246427 - 48246509
Alignment:
Q  159 aaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||||  ||||||| |||| ||||| ||| | |||||| ||| |||||| ||||||||||| ||||||||||||||||||    
T  48246427 aaatcctctctataaatagagacctcggaaatgggattcttcactacaaaaccgagaatcgaatcctcttctctggttttctc 48246509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 55129276 - 55129060
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  55129276 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaag-atggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 55129178  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  55129177 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 55129078  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  55129077 ttctctcctctcttctcc 55129060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 44 - 254
Target Start/End: Complemental strand, 17369199 - 17368989
Alignment:
Q  44 tatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcggatagat 143  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  17369199 tatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgggtagat 17369100  T
Q  144 cacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctctc 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17369099 cacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctc 17369000  T
Q  244 ctctctgctcc 254  Q
    |||||| ||||    
T  17368999 ctctcttctcc 17368989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 37 - 241
Target Start/End: Original strand, 15762585 - 15762789
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15762585 cttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 15762684  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15762685 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 15762784  T
Q  237 ttctc 241  Q
    |||||    
T  15762785 ttctc 15762789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 37 - 241
Target Start/End: Original strand, 15767746 - 15767950
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15767746 cttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 15767845  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15767846 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 15767945  T
Q  237 ttctc 241  Q
    |||||    
T  15767946 ttctc 15767950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 37 - 241
Target Start/End: Original strand, 20090217 - 20090421
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20090217 cttggagtatactagtgagtttgtggagcctttggcatgtaaacatcaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 20090316  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  20090317 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 20090416  T
Q  237 ttctc 241  Q
    |||||    
T  20090417 ttctc 20090421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 37 - 241
Target Start/End: Original strand, 20095342 - 20095546
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20095342 cttggagtatactagtgagtttgtggagcctttggcatgtaaacatcaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 20095441  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  20095442 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 20095541  T
Q  237 ttctc 241  Q
    |||||    
T  20095542 ttctc 20095546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 3481675 - 3481796
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  3481675 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 3481774  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  3481775 ggtagatcacacactctagtag 3481796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 34128437 - 34128558
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  34128437 cttggagtatactagttgatttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 34128536  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  34128537 ggtagatcacacactctagtag 34128558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 17358686 - 17358566
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |    
T  17358686 cttggattatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaa-tagtgtaaagtgtgaattgaaaattttatgtcccacattg 17358588  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  17358587 ggtagatcacacactctagtag 17358566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 30338126 - 30338247
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |    
T  30338126 cttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaattagtgtaaagtgtgaattgaaaattttatgtcccacattg 30338225  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  30338226 ggtagatcacacactctagtag 30338247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 30341230 - 30341351
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||      
T  30341230 cttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatggcccacatta 30341329  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  30341330 ggtagatcacacactctagtag 30341351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 54271433 - 54271312
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    |||| |||||||||||   | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |    
T  54271433 cttgaagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtctaaagtgtgaattgaaaattttatgtcccacattg 54271334  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  54271333 ggtagatcacacactctagtag 54271312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 3476249 - 3476339
Alignment:
Q  68 ttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcggatagatcacacactctagtag 158  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  3476249 ttggaatgtaaacacaatgatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 3476339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 4117007 - 4117097
Alignment:
Q  68 ttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcggatagatcacacactctagtag 158  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  4117007 ttggaatgtaaacacaatgatgaagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 4117097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 17358179 - 17358107
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||| | | |||||| |||||||||||||||||||||| ||||||||||||||||||    
T  17358179 tataaatagagagctcgggatttgcattcttcactccaaaactgagaatcgaatcctcttctctggttttctc 17358107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 54270986 - 54270914
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  54270986 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 54270914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 3482166 - 3482238
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| |||||||||| ||||||||||| ||||| ||||||||||||    
T  3482166 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttatctggttttctc 3482238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 4117345 - 4117417
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| |||||||||| ||||||||||| ||||||| ||||||||||    
T  4117345 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctttggttttctc 4117417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 30338506 - 30338578
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||| | | |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  30338506 tataaatagagagctcgggatttggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 30338578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 34128923 - 34128995
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| ||||| |||||| | | |||||| |||||||||||||||||||||| ||||||||||||||||||    
T  34128923 tataaatagagaggtcgggatttgcattcttcactccaaaactgagaatcgaatcctcttctctggttttctc 34128995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 3476699 - 3476771
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| |||||||||   |||||||||| ||||||||||||||||||    
T  3476699 tataaatagagagctcgggaatgggattcttcactccaaaaacaagaatcgaatcctcttctctggttttctc 3476771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 10321784 - 10321712
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||| | | |||||| |||||||||| |||||| |||| |||||||| |||||||||    
T  10321784 tataaatagagagctcgggatttgcattcttcactccaaaaccgagaattgaatcctcttctcaggttttctc 10321712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 10321861 - 10321816
Alignment:
Q  194 attctttactccaaaactgagaatcgaatactcttctctggttttc 239  Q
    |||||| || ||||||| ||||||||||| ||||||||||||||||    
T  10321861 attcttcaccccaaaaccgagaatcgaatcctcttctctggttttc 10321816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 33238542 - 33238338
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33238542 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 33238443  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33238442 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 33238343  T
Q  237 ttctc 241  Q
    |||||    
T  33238342 ttctc 33238338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 47994340 - 47994136
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47994340 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 47994241  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47994240 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 47994141  T
Q  237 ttctc 241  Q
    |||||    
T  47994140 ttctc 47994136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 33243719 - 33243515
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33243719 cttggagtatactagtgagtttgtggagcctttggcatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 33243620  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33243619 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 33243520  T
Q  237 ttctc 241  Q
    |||||    
T  33243519 ttctc 33243515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 47999515 - 47999311
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  47999515 cttggagtatattagtgagtttgtggagcctttggaatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtctcacatcg 47999416  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47999415 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 47999316  T
Q  237 ttctc 241  Q
    |||||    
T  47999315 ttctc 47999311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 2233978 - 2234099
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  2233978 cttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatgaagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 2234077  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  2234078 ggtagatcacacactctagtag 2234099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 21080347 - 21080468
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |    
T  21080347 cttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacgttg 21080446  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  21080447 ggtagatcacacactctagtag 21080468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 19308902 - 19309023
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  19308902 cttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 19309001  T
Q  137 gatagatcacacactctagtag 158  Q
    ||||||||||||||||||||||    
T  19309002 gatagatcacacactctagtag 19309023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 17496221 - 17496100
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  17496221 cttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 17496122  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  17496121 ggtagatcacacactctagtag 17496100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 17556993 - 17557114
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  17556993 cttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 17557092  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  17557093 ggtagatcacacactctagtag 17557114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 32211991 - 32212112
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |    
T  32211991 cttggagtatactagttgttatgttgagactttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtctcacattg 32212090  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  32212091 ggtagatcacacactctagtag 32212112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 42572721 - 42572600
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  42572721 cttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 42572622  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  42572621 ggtagatcacacactctagtag 42572600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 12935205 - 12935084
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  12935205 cttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 12935106  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||| ||||||    
T  12935105 ggtagatcacacactttagtag 12935084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 47176522 - 47176643
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  47176522 cttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 47176621  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  47176622 ggtagatcacacactctagtag 47176643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 16538699 - 16538813
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || |    
T  16538699 cttggagtatactagttgttatgtggagactttggaatgtagacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccatattg 16538798  T
Q  137 gatagatcacacact 151  Q
      |||||||||||||    
T  16538799 agtagatcacacact 16538813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 16626963 - 16626849
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || |    
T  16626963 cttggagtatactagttgttatgtggagactttggaatgtagacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccatattg 16626864  T
Q  137 gatagatcacacact 151  Q
      |||||||||||||    
T  16626863 agtagatcacacact 16626849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 43893663 - 43893542
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |||||||| ||| |    
T  43893663 cttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagcgtaaagtgtgaattgaaaattttatgtccctcattg 43893564  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  43893563 ggtagatcacacactctagtag 43893542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 2234384 - 2234456
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  2234384 tataaatagagagctcgggattagtattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 2234456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 47544775 - 47544828
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatgg 90  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47544775 cttggagtatactagagagtttgtggagcctttggaatgtaaacacaaggatgg 47544828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 12934738 - 12934666
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  12934738 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 12934666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 17495744 - 17495672
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||| |||| ||||||||||||||||||    
T  17495744 tataaatagagagctcgggaatgggattctttactccaaaaccgagaattgaatcctcttctctggttttctc 17495672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 17557470 - 17557542
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||| |||| ||||||||||||||||||    
T  17557470 tataaatagagagctcgggaatgggattctttactccaaaaccgagaattgaatcctcttctctggttttctc 17557542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 19309365 - 19309437
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| |||||||||| ||||||| ||| ||||||||||||||||||    
T  19309365 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcaaatcctcttctctggttttctc 19309437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 21080793 - 21080865
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||| | | |||||| ||| |||||||||||||||||| ||||||||||||||||||    
T  21080793 tataaatagagagctcgggatttgcattcttcacttcaaaactgagaatcgaatcctcttctctggttttctc 21080865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 42572286 - 42572214
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||| ||||||||| | |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  42572286 tataaatagagaactcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 42572214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 43893210 - 43893138
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| |||||||||  ||||||||||| ||||||||||||||||||    
T  43893210 tataaatagagagctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctctggttttctc 43893138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 16539166 - 16539238
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| |||||||||| ||||||  ||| ||||||||||||||||||    
T  16539166 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaattaaatcctcttctctggttttctc 16539238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 16626496 - 16626424
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| |||||||||| ||||||  ||| ||||||||||||||||||    
T  16626496 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaattaaatcctcttctctggttttctc 16626424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 47176904 - 47176976
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| ||||||||||||||   |||||| |||||||||| || |||||||| ||||||||||||||||||    
T  47176904 tataaatagagagctcgggaatgagattcttcactccaaaaccgataatcgaatcctcttctctggttttctc 47176976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 32212419 - 32212479
Alignment:
Q  181 gctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    |||||||||| | |||||| |||||||||| ||||||||||| |||||||||| |||||||    
T  32212419 gctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctgattttctc 32212479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 3564 - 3360
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  3564 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcc 3465  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3464 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 3365  T
Q  237 ttctc 241  Q
    |||||    
T  3364 ttctc 3360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 37 - 241
Target Start/End: Original strand, 80971 - 81175
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  80971 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcc 81070  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  81071 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 81170  T
Q  237 ttctc 241  Q
    |||||    
T  81171 ttctc 81175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 32011066 - 32010862
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32011066 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 32010967  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32010966 ggtagatcatacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 32010867  T
Q  237 ttctc 241  Q
    |||||    
T  32010866 ttctc 32010862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 32016240 - 32016036
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  32016240 cttggagtatactagtgaatttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 32016141  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32016140 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 32016041  T
Q  237 ttctc 241  Q
    |||||    
T  32016040 ttctc 32016036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 38 - 254
Target Start/End: Original strand, 2165421 - 2165638
Alignment:
Q  38 ttggagtatactagtgagtttgtggagcctttgg-aatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  2165421 ttggagtatactagtgagtttgtggagtctttgggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtctcacatcg 2165520  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| ||||||||| |||    
T  2165521 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaattgagaatcaaatgctcttctctagtt 2165620  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||| ||||| ||||    
T  2165621 ttctctcatctcttctcc 2165638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 43998572 - 43998693
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  43998572 cttggagtatactagttggtttgtggagcctttgaaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 43998671  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  43998672 ggtagatcacacactctagtag 43998693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 41 - 158
Target Start/End: Original strand, 17955164 - 17955281
Alignment:
Q  41 gagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcggata 140  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || ||    
T  17955164 gagtatactagttgttttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtgaagtgtgaattgaaaattttatgtcccacattgggta 17955263  T
Q  141 gatcacacactctagtag 158  Q
    ||||||||||||||||||    
T  17955264 gatcacacactctagtag 17955281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 24885445 - 24885324
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  24885445 cttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 24885346  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  24885345 ggtagatcacacactctagtag 24885324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 42513874 - 42513995
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | ||||||| | |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||| |    
T  42513874 cttggagtatactagttgttatgtggagacattggaatgtaaacacaaggatgtagaaaatagtgtaaagtgtgaattgaaaattttatgtcccacattg 42513973  T
Q  137 gatagatcacacactctagtag 158  Q
    ||||||||||||||||||||||    
T  42513974 gatagatcacacactctagtag 42513995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 21641184 - 21641273
Alignment:
Q  68 ttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcggatagatcacacactctagtag 158  Q
    |||||||||||| ||||||||| |||  |||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  21641184 ttggaatgtaaatacaaggatgtagat-ctagtgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 21641273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 24885064 - 24884982
Alignment:
Q  159 aaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||||  ||||||| |||||||||||||| | |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  24885064 aaatcctctctataaatagagagctcgggaatggaattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 24884982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 21643835 - 21643907
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||| ||||||||| | |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  21643835 tataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 21643907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 21643020 - 21643092
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||| ||||||||| | |||||| |||||||||| ||||||||||| ||||||| ||||||||||    
T  21643020 tataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctttggttttctc 21643092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 21643395 - 21643467
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||| ||||||||| | |||||| |||||||||| ||||||||||| ||||||| ||||||||||    
T  21643395 tataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctttggttttctc 21643467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 43998984 - 43999056
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||| |   ||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  43998984 tataaatagagagctcgggatttacattctttactctaaaactgagaatcgaatcctcttctctgattttctc 43999056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 42514182 - 42514245
Alignment:
Q  177 gagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttct 240  Q
    ||||||||||||||   |||||| |||||||||| ||||||||||| |||||||||||||||||    
T  42514182 gagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttctctggttttct 42514245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 21641520 - 21641592
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||| ||||||||| | |||||| |||||||||  ||||||||||| ||||||| ||||||||||    
T  21641520 tataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttctc 21641592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 21641895 - 21641967
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||| ||||||||| | |||||| |||||||||  ||||||||||| ||||||| ||||||||||    
T  21641895 tataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttctc 21641967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 21642270 - 21642342
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||| ||||||||| | |||||| |||||||||  ||||||||||| ||||||| ||||||||||    
T  21642270 tataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttctc 21642342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 21642645 - 21642717
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||| ||||||||| | |||||| |||||||||  ||||||||||| ||||||| ||||||||||    
T  21642645 tataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttctc 21642717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 37 - 241
Target Start/End: Original strand, 42728175 - 42728379
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42728175 cttggagtttactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 42728274  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42728275 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 42728374  T
Q  237 ttctc 241  Q
    |||||    
T  42728375 ttctc 42728379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 44096842 - 44096638
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44096842 cttggagtatactagtgagtttgtggagcatttggaatgtaaacaaaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 44096743  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44096742 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 44096643  T
Q  237 ttctc 241  Q
    |||||    
T  44096642 ttctc 44096638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 38 - 241
Target Start/End: Original strand, 42723007 - 42723210
Alignment:
Q  38 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcgg 137  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42723007 ttggagtttactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 42723106  T
Q  138 atagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttt 237  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42723107 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 42723206  T
Q  238 tctc 241  Q
    ||||    
T  42723207 tctc 42723210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 40392806 - 40392589
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40392806 cttggagtatactagtgagtttgtggagcctttgcaatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 40392707  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||    
T  40392706 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatacttttctctgatt 40392607  T
Q  237 ttctctcctctctgctcc 254  Q
    ||||||||||||| ||||    
T  40392606 ttctctcctctcttctcc 40392589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 37 - 231
Target Start/End: Original strand, 44754161 - 44754355
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44754161 cttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 44754260  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctc 231  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44754261 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctc 44754355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 37 - 231
Target Start/End: Original strand, 44759327 - 44759521
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  44759327 cttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaattagtgtaaagtgtgaattgaaaattttatgtcccacatcg 44759426  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctc 231  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44759427 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctc 44759521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 37 - 254
Target Start/End: Original strand, 40518075 - 40518297
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatc- 135  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  40518075 cttggagtataatagtgagtttgtggagcctttggaatataaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 40518174  T
Q  136 ggatagatcacacactctagtagaaatcctcctt----ataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctc 231  Q
    || |||||||||||||||||||||||||||||||    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  40518175 gggtagatcacacactctagtagaaatcctccttattaataaattgagagctcgtgaatagtattcttcactccaaaactgagaatcgaatactcttctc 40518274  T
Q  232 tggttttctctcctctctgctcc 254  Q
    | |||||||||||||||| ||||    
T  40518275 ttgttttctctcctctcttctcc 40518297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 40 - 232
Target Start/End: Complemental strand, 40520122 - 40519925
Alignment:
Q  40 ggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatc-gga 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||     
T  40520122 ggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgggg 40520023  T
Q  139 tagatcacacactctagtagaaatcctcctt----ataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctct 232  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40520022 tagatcacacactctagtagaaatcctccttatgaataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctct 40519925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 4162921 - 4163042
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  4162921 cttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 4163020  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  4163021 ggtagatcacacactctagtag 4163042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 28751047 - 28751168
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  28751047 cttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 28751146  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  28751147 ggtagatcacacactctagtag 28751168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 4163331 - 4163403
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||| | | |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  4163331 tataaatagagagctcgggatttgcattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 4163403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 28751483 - 28751555
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| ||||||||||||||   |||||| |||||||||| ||||||||||| ||||||| ||||||||||    
T  28751483 tataaatagagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttctttggttttctc 28751555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 32085 - 31881
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32085 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 31986  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  31985 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcacaccaaaactgagaatcgaatactcttatctggtt 31886  T
Q  237 ttctc 241  Q
    |||||    
T  31885 ttctc 31881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 26913 - 26709
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26913 cttggagtatactagtgagtttgtggagcctttggaatgtaaacaaaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 26814  T
Q  137 gatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  26813 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcacaccaaaactgagaatcgaatactcttatctggtt 26714  T
Q  237 ttctc 241  Q
    |||||    
T  26713 ttctc 26709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 8560 - 8681
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |    
T  8560 cttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaatttaaaattttatgtcccacattg 8659  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  8660 ggtagatcacacactctagtag 8681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 8962 - 9034
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| |||||||||  ||||||||||| ||||||||| ||||||||    
T  8962 tataaatagagagctcgggaatgggattcttcactccaaaaacgagaatcgaatcctcttctctagttttctc 9034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 13012 - 13133
Alignment:
Q  37 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcg 136  Q
    ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |    
T  13012 cttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 13111  T
Q  137 gatagatcacacactctagtag 158  Q
    | ||||||||||||||||||||    
T  13112 ggtagatcacacactctagtag 13133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 18500 - 18590
Alignment:
Q  68 ttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattatatgtcccacatcggatagatcacacactctagtag 158  Q
    ||||||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  18500 ttggaatgtaaacacaatgatgtagaaactagtataaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 18590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 18946 - 19018
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||| ||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18946 tataaatagagagctcaggattggtattctttactccaaaaccgagaatcgaatactcttctctggttttctc 19018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 13493 - 13565
Alignment:
Q  169 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||| |||||||||||||| | |||||| ||||||||||  |||||||||| ||||||||||||||||||    
T  13493 tataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctc 13565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 37361 - 37279
Alignment:
Q  159 aaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctc 241  Q
    ||||||||  ||||||| ||||||||||||||   |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  37361 aaatcctctctataaatagagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 37279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 37712 - 37654
Alignment:
Q  100 tgtaaagtgtgaattgaaaattatatgtcccacatcggatagatcacacactctagtag 158  Q
    |||||||||||||||||||||| |||||||||||| || |||||||||||||| |||||    
T  37712 tgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactccagtag 37654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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