View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3465_low_4 (Length: 239)
Name: NF3465_low_4
Description: NF3465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3465_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 20286232 - 20286460
Alignment:
| Q |
1 |
ctatgtctctgctagaacaccgtcatatggccccctcttccacctgtttcagatgtggagaagacgaagaaaccattatgcattgcattcgggattgtcg |
100 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20286232 |
ctatgtctcttctcgaacaccgtcatatggccccctcttccacctgttccagatgtggagaagacgaagaaaccattatgcattgccttcgggattgtcg |
20286331 |
T |
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| Q |
101 |
tttctcctccattatgtggcaccggctcggtttcacggataccgcttttttcaacgaagcttttccatcaagctggatcaaacaacacgctactggtaac |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20286332 |
tttctcctccattatttggcaccggctcggtttcacggataccgcttttttcaacgaagcttttccatcaagctggatcaaacaacacgctaccggtaac |
20286431 |
T |
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| Q |
201 |
aactcttcccttttcctttccggtctctg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
20286432 |
aactcttcccttttcctttccggtctctg |
20286460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 11898531 - 11898759
Alignment:
| Q |
1 |
ctatgtctctgctagaacaccgtcatatggccccctcttccacctgtttcagatgtggagaagacgaagaaaccattatgcattgcattcgggattgtcg |
100 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
11898531 |
ctatgtctcttctcgaacaccgtcatatggccccctcttccacctgttccagatgtggagaagacgaagaaaccattatgcattgccttcggtattgtcg |
11898630 |
T |
|
| Q |
101 |
tttctcctccattatgtggcaccggctcggtttcacggataccgcttttttcaacgaagcttttccatcaagctggatcaaacaacacgctactggtaac |
200 |
Q |
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| T |
11898631 |
tttctcctccattatttggcaccggctcggtttcacggataccgcttttttcaacgaagcttttccatcaagctggatcaaacaacacgctaccggtaac |
11898730 |
T |
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| Q |
201 |
aactcttcccttttcctttccggtctctg |
229 |
Q |
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| T |
11898731 |
aactcttcccttttcctttccggtctctg |
11898759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 26431445 - 26431342
Alignment:
| Q |
18 |
caccgtcatatggccccctcttccacctgtttcagatgtggagaagacgaagaaaccattatgcattgcattcgggattgtcgtttctcctccattatgt |
117 |
Q |
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| T |
26431445 |
caccgtcagatggctccttcctcaacctgttcgcgatgtggcgaagacgaagaaaccattatgcattgccttcgggactgtcgtttctcttccatcattt |
26431346 |
T |
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| Q |
118 |
ggca |
121 |
Q |
| |
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|||| |
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| T |
26431345 |
ggca |
26431342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 23131335 - 23131121
Alignment:
| Q |
15 |
gaacaccgtcatatggccccctcttccacctgtttcagatgtggagaagacgaagaaaccattatgcattgcattcgggattgtcgtttctcctccatta |
114 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| |
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| T |
23131335 |
gaacaccgtcatatggccccctcttccacctgttccagatgtggagaagacgaagaaaccattatgcattgccttcgggattgtcatttctcctcaatta |
23131236 |
T |
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| Q |
115 |
tgtggcaccggctcggtttcacggataccgcttttttcaacgaagcttttccatcaagctggatcaaacaacacgctactggtaacaactcttccctttt |
214 |
Q |
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| T |
23131235 |
tttggcaccggctcggtttcacggataccgcttttttcaacgaagcttttccataaagctggatcaaacaacacgctactggtaacaactcttccctttt |
23131136 |
T |
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| Q |
215 |
cctttccggtctctg |
229 |
Q |
| |
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|||||| |||||||| |
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| T |
23131135 |
cctttctggtctctg |
23131121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 14652429 - 14652284
Alignment:
| Q |
16 |
aacaccgtcatatggccccctcttccacctgtttcagatgtggagaagacgaagaaaccattatgcattgcattcgggattgtcgtttctcctccattat |
115 |
Q |
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||||||| |||||||| |||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||| |
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| T |
14652429 |
aacaccgacatatggctccctcttctacctgttcgagatgtggagaagacgaagaaaccataatgcattgccttcgggattgtcgcttctcctccattat |
14652330 |
T |
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| Q |
116 |
gtggcaccggctcggtttcacggataccgcttttttcaacgaagct |
161 |
Q |
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||| ||| ||||||||| || |||| || |||| |||| |||||| |
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| T |
14652329 |
ttggtaccagctcggttttactgataacgtttttctcaatgaagct |
14652284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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