View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3466_high_1 (Length: 752)

Name: NF3466_high_1
Description: NF3466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3466_high_1
NF3466_high_1
[»] chr1 (2 HSPs)
chr1 (215-743)||(41815583-41816110)
chr1 (16-179)||(41816141-41816304)
[»] chr2 (4 HSPs)
chr2 (327-387)||(10455113-10455173)
chr2 (320-387)||(519036-519103)
chr2 (320-387)||(21153219-21153286)
chr2 (330-387)||(24460133-24460190)
[»] chr8 (1 HSPs)
chr8 (320-387)||(39069569-39069636)
[»] chr3 (3 HSPs)
chr3 (320-387)||(54409976-54410043)
chr3 (320-387)||(55135919-55135986)
chr3 (320-387)||(32000548-32000615)
[»] chr5 (1 HSPs)
chr5 (320-387)||(6720155-6720222)
[»] chr4 (1 HSPs)
chr4 (320-387)||(47650129-47650201)


Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 215 - 743
Target Start/End: Complemental strand, 41816110 - 41815583
Alignment:
Q  215 tgtgtttcttgttttctctaaaatttgatgataacaatggtgtttgcagcgagaaggatgcacaaatgtgtatatatcatgtttcatggaaaaccaattt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41816110 tgtgtttcttgttttctctaaaatttgatgataacaatggtgtttgcagcgagaaggatgcacaaatgtgtatatatcatgtttcatggaaaaccaattt 41816011  T
Q  315 tgggttttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaacctttgtttcaaagtttgaattaaacatgttt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41816010 tgggttttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaacctttgtttcaaagtttgaattaaacatgttt 41815911  T
Q  415 aatgaaatttgaaatgcttgttgtgaacttgtgattgtggtgcaggtgtgcctggtgtcttgtctgttcagccagatgacaattttgagtctgaaaataa 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41815910 aatgaaatttgaaatgcttgttgtgaacttgtgattgtggtgcaggtgtgcctggggtcttgtctgttcagccagatgacaattttgagtctgaaaataa 41815811  T
Q  515 ggattatgaaggtttgccgttttgtaaattccacacatttttgcctttgggaactctttgctaatatattataaatttacatcggtataagttatgtggt 614  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41815810 ggattatgaaggtttg-cgttttgtaaattccacacatttttgcctttgggaactctttgctaatatattataaatttacatcggtataagttatgtggt 41815712  T
Q  615 ttgtgtgattttggtccttgtatctaggatgatattttgtgttaatttatattttgtctttgaccggcatgcgtccgtgccacacttctatgactatgac 714  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41815711 ttgtgtgattttggtccttgtatctaggatgatattttgtgttaatttatattttgtctttgaccggcatgcgtccgtgccacacttctatgactatgac 41815612  T
Q  715 gtttaaaggtatgtcaaagtagtgatgat 743  Q
    |||||||||||||||||||||||||||||    
T  41815611 gtttaaaggtatgtcaaagtagtgatgat 41815583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 41816304 - 41816141
Alignment:
Q  16 aattccacaaaccgatatgttgttgttccctaatggaaattcaaagcattgggttgttagaatggataaacctgttgttggtgttgttaccaaagctcaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41816304 aattccacaaaccgatatgttgttgttccctaatggaaattcaaagcattgggttgttagaatggataaacctgctgttggtgttgttaccaaagctcaa 41816205  T
Q  116 attgttgaccattatgctcaaattttgaccaaaatcatgggaaagtaagtaaggacattcaatt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41816204 attgttgaccattatgctcaaattttgaccaaaatcatgggaaagtaagtaaggacattcaatt 41816141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 327 - 387
Target Start/End: Complemental strand, 10455173 - 10455113
Alignment:
Q  327 tgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 387  Q
    ||||||||| |||||||||||| |||||||| ||| |||||||| ||||||||||||||||    
T  10455173 tgaacttgacgaggattgtgcatatgagctagctgtttagctttttagattcttaaccttt 10455113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 387
Target Start/End: Original strand, 519036 - 519103
Alignment:
Q  320 tttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 387  Q
    |||| ||||||||||  |||||||||||| |||||||| ||| |||||||| ||||||||||||||||    
T  519036 tttgatgtgaacttggcgaggattgtgcatatgagctagctgtttagctttttagattcttaaccttt 519103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 387
Target Start/End: Original strand, 21153219 - 21153286
Alignment:
Q  320 tttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 387  Q
    |||| ||||||||||| ||| |||||||| |||||||| ||| |||||||| ||||||||||||||||    
T  21153219 tttgatgtgaacttgacgagcattgtgcatatgagctagctgtttagctttttagattcttaaccttt 21153286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 24460190 - 24460133
Alignment:
Q  330 acttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 387  Q
    |||||| ||||||||| || |||| ||| ||| |||||||| ||||||||||||||||    
T  24460190 acttgacgaggattgtacatatgaactagctgtttagctttttagattcttaaccttt 24460133  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 387
Target Start/End: Original strand, 39069569 - 39069636
Alignment:
Q  320 tttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 387  Q
    |||| ||||| ||||| |||||||||||| |||||||| ||| |||||||| ||||||||||||||||    
T  39069569 tttgatgtgagcttgacgaggattgtgcatatgagctagctgtttagctttttagattcttaaccttt 39069636  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 387
Target Start/End: Original strand, 54409976 - 54410043
Alignment:
Q  320 tttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 387  Q
    |||| ||||||||||| |||||||||||| ||||||||  || |||||||| ||||||||||||||||    
T  54409976 tttgatgtgaacttgacgaggattgtgcatatgagctagttgtttagctttttagattcttaaccttt 54410043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 387
Target Start/End: Complemental strand, 55135986 - 55135919
Alignment:
Q  320 tttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 387  Q
    |||| ||||||||||| |||||||||||| |||||||| ||| |||||||| ||| ||||||||||||    
T  55135986 tttgatgtgaacttgacgaggattgtgcatatgagctagctgtttagctttttagtttcttaaccttt 55135919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 320 - 387
Target Start/End: Complemental strand, 32000615 - 32000548
Alignment:
Q  320 tttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 387  Q
    |||| ||||||||||| |||||||||||| ||||||||  || |||||||| |||||| |||||||||    
T  32000615 tttgatgtgaacttgacgaggattgtgcatatgagctagttgtttagctttttagatttttaaccttt 32000548  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 320 - 387
Target Start/End: Original strand, 6720155 - 6720222
Alignment:
Q  320 tttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 387  Q
    |||| ||||||||||| ||||||| |||| |||||||| ||| ||| |||| ||||||||||||||||    
T  6720155 tttgatgtgaacttgacgaggattttgcatatgagctagctgtttaactttttagattcttaaccttt 6720222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 320 - 387
Target Start/End: Complemental strand, 47650201 - 47650129
Alignment:
Q  320 tttgttgtgaacttgatgaggattgtgcacatgagctatctggttagcttta-----tagattcttaaccttt 387  Q
    |||| ||||||||||| |||||||||||| |||||||| ||| |||||||||     ||||||||||||||||    
T  47650201 tttgatgtgaacttgacgaggattgtgcatatgagctagctgtttagctttaatttttagattcttaaccttt 47650129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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