View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3467_high_1 (Length: 829)

Name: NF3467_high_1
Description: NF3467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3467_high_1
NF3467_high_1
[»] chr6 (10 HSPs)
chr6 (160-820)||(6002828-6003499)
chr6 (16-136)||(6003499-6003617)
chr6 (217-259)||(31030643-31030685)
chr6 (211-273)||(9311937-9311999)
chr6 (213-259)||(29069477-29069523)
chr6 (220-277)||(1535304-1535361)
chr6 (217-258)||(2445297-2445338)
chr6 (229-278)||(12204379-12204428)
chr6 (222-259)||(12904338-12904375)
chr6 (216-265)||(17420733-17420782)
[»] chr3 (8 HSPs)
chr3 (229-280)||(29791786-29791837)
chr3 (217-273)||(5117206-5117262)
chr3 (222-266)||(17755124-17755168)
chr3 (222-266)||(19056444-19056488)
chr3 (243-284)||(36692166-36692207)
chr3 (222-278)||(33404231-33404287)
chr3 (217-259)||(3176994-3177036)
chr3 (217-258)||(41168160-41168201)
[»] chr1 (6 HSPs)
chr1 (222-259)||(32209859-32209896)
chr1 (217-284)||(3573321-3573387)
chr1 (222-259)||(12213996-12214033)
chr1 (208-259)||(30279641-30279692)
chr1 (217-259)||(9005677-9005719)
chr1 (230-259)||(47070859-47070888)
[»] scaffold0053 (1 HSPs)
scaffold0053 (230-278)||(14211-14259)
[»] chr2 (7 HSPs)
chr2 (217-273)||(8788301-8788357)
chr2 (776-820)||(36204632-36204676)
chr2 (213-284)||(40967367-40967438)
chr2 (229-284)||(3196570-3196625)
chr2 (230-279)||(17394685-17394734)
chr2 (213-282)||(21497661-21497730)
chr2 (213-282)||(32957541-32957610)
[»] chr7 (7 HSPs)
chr7 (213-259)||(28200406-28200452)
chr7 (217-260)||(2622323-2622366)
chr7 (222-265)||(43539119-43539162)
chr7 (213-259)||(25602911-25602957)
chr7 (222-268)||(38779983-38780029)
chr7 (214-259)||(1285090-1285135)
chr7 (224-265)||(45645251-45645292)
[»] chr8 (5 HSPs)
chr8 (229-273)||(1230668-1230712)
chr8 (217-259)||(11771705-11771747)
chr8 (213-259)||(29716721-29716767)
chr8 (217-266)||(8020308-8020357)
chr8 (217-266)||(18422467-18422516)
[»] chr5 (2 HSPs)
chr5 (229-273)||(2705523-2705567)
chr5 (213-265)||(40782350-40782402)
[»] chr4 (5 HSPs)
chr4 (217-273)||(6094184-6094240)
chr4 (222-273)||(52936644-52936695)
chr4 (217-258)||(11949685-11949726)
chr4 (222-259)||(20403189-20403226)
chr4 (224-273)||(39842019-39842068)


Alignment Details
Target: chr6 (Bit Score: 504; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 160 - 820
Target Start/End: Complemental strand, 6003499 - 6002828
Alignment:
Q  160 taaccattaattaaatcaatttagccttagttatataatatatccatttatacgtcatcgtaagcttacctcagttgataggaacaatacataatatatg 259  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  6003499 taaccattaattaaatcaatttagccttagttata--atatatccatttatacgtcatcgtaagcttacctcagttggtaggaacaatatataatatatg 6003402  T
Q  260 ttaggtttgaggtttaaatctcgacnnnnnnnnnn-----tccattatacacattaacaatatttttgacacatttactaacaaaaaatatttttgacac 354  Q
    |||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6003401 ttaggtttgaggtttaaatctcgacaaaaaaaaaaaaaaatccattatacacattaacaatatttttgacacatttactaacaaaaaatatttttgacac 6003302  T
Q  355 atatacacttgtcatgtcatcttcaaataaaagttaaggaaaaataataatattgattccatatttatttcacgatttcatctgtacggtgaacctacaa 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6003301 atatacacttgtcatgtcatcttcaaataaaagttaaggaaaaataataatattgattccatatttatttcacgatttcatctgtacggtgaacctacaa 6003202  T
Q  455 caaactcatctcttttttactcttggactctgggacttaacatgaagagaaaccatctatctgaattttacattttttcctttcaatgatccaaaatagt 554  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6003201 caaactcatctcttttttactcttggactctggggcttaacatgaagagaaaccatctatctcaattttacattttttcctttcaatgatccaaaatagt 6003102  T
Q  555 ctaccaaaattg---------aaaattgaatctgaaactttgagagaaacacactcgaaaagtttaaatcaataccaacaagccaatccaataaatttaa 645  Q
    ||||| ||||||         |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  6003101 ctaccgaaattgatattgaaaaaaattgaatctaaaactttaagagaaacacactcgaaaagtttaaatcaataccaacaaaccaatccaatgaatttaa 6003002  T
Q  646 ttttacatctcttaatagtttctcataggataaatgttttaataaactaaccatcagattgaaatttctgatataataaactatctatataaacttttaa 745  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6003001 ttttacatctcttaatagtttctcataggataaatgttttaataaactaaccattagattgaaatttctgatataataaactatctatataaacttttaa 6002902  T
Q  746 gnnnnnnnccaatatcattggatatgtcattgtgtaatcgattcaaggtgggcgttccgatgttttgactctctg 820  Q
    |       |||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||    
T  6002901 g-aaaaaaccaatatcattggatatgtcattgtgtaattgatttaaggtgggcgttccggtgttttgactctctg 6002828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 6003617 - 6003499
Alignment:
Q  16 ataaatatgttaacttcatcgagtttttcctccatctgacgtagagatggcaatgaggttccacactatagagatacaaacacatgcacaaaattgaaac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||    
T  6003617 ataaatatgttaacttcatcgagtttttcctccatctgacgtagagatggcaatgaggttccacactat--agatacaaacacatgcacaaaattgacac 6003520  T
Q  116 tatatatttctttatttgagt 136  Q
    |||||||||||||||||||||    
T  6003519 tatatatttctttatttgagt 6003499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 31030685 - 31030643
Alignment:
Q  217 tcgtaagcttacctcagttgataggaacaatacataatatatg 259  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  31030685 tcgtaagcttacttcagttgatagaaacaatacataatatatg 31030643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 9311999 - 9311937
Alignment:
Q  211 acgtcatcgtaagcttacctcagttgataggaacaatacataatatatgttaggtttgaggtt 273  Q
    ||||| |||| |||||| |||||||| || ||| |||||||||||||||| || |||||||||    
T  9311999 acgtcctcgtgagcttaactcagttggtatgaataatacataatatatgtaagatttgaggtt 9311937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 29069477 - 29069523
Alignment:
Q  213 gtcatcgtaagcttacctcagttgataggaacaatacataatatatg 259  Q
    |||||||| |||||| ||||||||||||| ||||| |||||||||||    
T  29069477 gtcatcgtgagcttagctcagttgatagggacaatgcataatatatg 29069523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 1535304 - 1535361
Alignment:
Q  220 taagcttacctcagttgataggaacaatacataatatatgttaggtttgaggtttaaa 277  Q
    ||||||||  |||||||||||||||||| |||||||||||  ||| |||| |||||||    
T  1535304 taagcttagttcagttgataggaacaatgcataatatatgcaaggattgaagtttaaa 1535361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 2445297 - 2445338
Alignment:
Q  217 tcgtaagcttacctcagttgataggaacaatacataatatat 258  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||    
T  2445297 tcgtaagcttaactcagttgatatgaacaatgcataatatat 2445338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 12204379 - 12204428
Alignment:
Q  229 ctcagttgataggaacaatacataatatatgttaggtttgaggtttaaat 278  Q
    ||||||||||| | ||||| |||||||||||| |||||||| ||||||||    
T  12204379 ctcagttgatatggacaatgcataatatatgtaaggtttgaagtttaaat 12204428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 12904375 - 12904338
Alignment:
Q  222 agcttacctcagttgataggaacaatacataatatatg 259  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  12904375 agcttacctcagttgatatgaacaatgcataatatatg 12904338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 17420782 - 17420733
Alignment:
Q  216 atcgtaagcttacctcagttgataggaacaatacataatatatgttaggt 265  Q
    |||||||||||| |||||||| ||  ||||||||||||||||||| ||||    
T  17420782 atcgtaagcttaactcagttggtataaacaatacataatatatgtaaggt 17420733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 29791786 - 29791837
Alignment:
Q  229 ctcagttgataggaacaatacataatatatgttaggtttgaggtttaaatct 280  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| ||||||    
T  29791786 ctcagttgatagaaacaatacataatatatgtaaggtttgaggttcaaatct 29791837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 5117206 - 5117262
Alignment:
Q  217 tcgtaagcttacctcagttgataggaacaatacataatatatgttaggtttgaggtt 273  Q
    |||| |||||| ||||||||||| | |||||||||||||||||| ||||||||||||    
T  5117206 tcgtgagcttagctcagttgataaggacaatacataatatatgtaaggtttgaggtt 5117262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 17755124 - 17755168
Alignment:
Q  222 agcttacctcagttgataggaacaatacataatatatgttaggtt 266  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  17755124 agcttagctcagttgataggaacaatacataatatatgtaaggtt 17755168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 19056444 - 19056488
Alignment:
Q  222 agcttacctcagttgataggaacaatacataatatatgttaggtt 266  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  19056444 agcttagctcagttgataggaacaatacataatatatgtaaggtt 19056488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 36692207 - 36692166
Alignment:
Q  243 acaatacataatatatgttaggtttgaggtttaaatctcgac 284  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  36692207 acaatacataatatatgcaaggtttgaggtttaaatctcgac 36692166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 33404231 - 33404287
Alignment:
Q  222 agcttacctcagttgataggaacaatacataatatatgttaggtttgaggtttaaat 278  Q
    |||||| ||||||||||| | |||||||||||||||||| | |||||||||| ||||    
T  33404231 agcttagctcagttgatatggacaatacataatatatgtaaagtttgaggttcaaat 33404287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 3177036 - 3176994
Alignment:
Q  217 tcgtaagcttacctcagttgataggaacaatacataatatatg 259  Q
    ||||||||||| |||||||| |||||||||| |||||||||||    
T  3177036 tcgtaagcttaactcagttggtaggaacaatgcataatatatg 3176994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 41168201 - 41168160
Alignment:
Q  217 tcgtaagcttacctcagttgataggaacaatacataatatat 258  Q
    ||||||||||| ||| ||||||||||||||| ||||||||||    
T  41168201 tcgtaagcttaactcggttgataggaacaatgcataatatat 41168160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 32209896 - 32209859
Alignment:
Q  222 agcttacctcagttgataggaacaatacataatatatg 259  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32209896 agcttacctcagttgataggaacaatacataatatatg 32209859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 3573387 - 3573321
Alignment:
Q  217 tcgtaagcttacctcagttgataggaacaatacataatatatgttaggtttgaggtttaaatctcgac 284  Q
    |||| |||||| |||||||| |||||||||| |||||||||||| |||||||| ||||||||| ||||    
T  3573387 tcgtgagcttaactcagttggtaggaacaatgcataatatatgtaaggtttga-gtttaaatcccgac 3573321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 12213996 - 12214033
Alignment:
Q  222 agcttacctcagttgataggaacaatacataatatatg 259  Q
    |||||| |||||||||||||||||||||||||||||||    
T  12213996 agcttagctcagttgataggaacaatacataatatatg 12214033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 30279692 - 30279641
Alignment:
Q  208 tatacgtcatcgtaagcttacctcagttgataggaacaatacataatatatg 259  Q
    |||| ||| |||| |||||| ||||||||||||| |||||||||||||||||    
T  30279692 tatatgtcctcgtgagcttagctcagttgataggtacaatacataatatatg 30279641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 9005677 - 9005719
Alignment:
Q  217 tcgtaagcttacctcagttgataggaacaatacataatatatg 259  Q
    ||||||||||| |||||||| |||| |||||||||||||||||    
T  9005677 tcgtaagcttaactcagttggtagggacaatacataatatatg 9005719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 259
Target Start/End: Original strand, 47070859 - 47070888
Alignment:
Q  230 tcagttgataggaacaatacataatatatg 259  Q
    ||||||||||||||||||||||||||||||    
T  47070859 tcagttgataggaacaatacataatatatg 47070888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 14211 - 14259
Alignment:
Q  230 tcagttgataggaacaatacataatatatgttaggtttgaggtttaaat 278  Q
    ||||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  14211 tcagttgatagtaacaatacataatatatgtaaggtttgaggttcaaat 14259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 8788357 - 8788301
Alignment:
Q  217 tcgtaagcttacctcagttgataggaacaatacataatatatgttaggtttgaggtt 273  Q
    |||||||||||  ||||||||||||||||||||||||||||||| || ||| |||||    
T  8788357 tcgtaagcttaggtcagttgataggaacaatacataatatatgtaagatttaaggtt 8788301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 776 - 820
Target Start/End: Complemental strand, 36204676 - 36204632
Alignment:
Q  776 tgtgtaatcgattcaaggtgggcgttccgatgttttgactctctg 820  Q
    |||||||||||||| |||| |||||||||||||||||||||||||    
T  36204676 tgtgtaatcgattcgaggtaggcgttccgatgttttgactctctg 36204632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 40967438 - 40967367
Alignment:
Q  213 gtcatcgtaagcttacctcagttgataggaacaatacataatatatgttaggtttgaggtttaaatctcgac 284  Q
    |||||||| |||||| ||||||||||| | ||||| |||||||||||  |||||||||||| ||| ||||||    
T  40967438 gtcatcgtgagcttaactcagttgataaggacaatgcataatatatgcaaggtttgaggttcaaacctcgac 40967367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 3196570 - 3196625
Alignment:
Q  229 ctcagttgataggaacaatacataatatatgttaggtttgaggtttaaatctcgac 284  Q
    ||||||||||| ||||||| |||||||||||| ||||| ||| || ||||||||||    
T  3196570 ctcagttgatatgaacaatgcataatatatgtaaggttcgagattcaaatctcgac 3196625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 17394685 - 17394734
Alignment:
Q  230 tcagttgataggaacaatacataatatatgttaggtttgaggtttaaatc 279  Q
    |||||||||||||| |||||||||||||||| ||||| | ||||| ||||    
T  17394685 tcagttgataggaataatacataatatatgtaaggttcggggtttgaatc 17394734  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 21497661 - 21497730
Alignment:
Q  213 gtcatcgtaagcttacctcagttgataggaacaatacataatatatgttaggtttgaggtttaaatctcg 282  Q
    |||||||| |||||| ||| |||| || ||||||| |||||||||||  ||||| |||||||||| ||||    
T  21497661 gtcatcgtgagcttaactcggttggtaagaacaatgcataatatatgcaaggttcgaggtttaaacctcg 21497730  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 32957610 - 32957541
Alignment:
Q  213 gtcatcgtaagcttacctcagttgataggaacaatacataatatatgttaggtttgaggtttaaatctcg 282  Q
    |||||||| || ||| ||| |||| || ||||||| |||||||||||| ||||||| |||||||| ||||    
T  32957610 gtcatcgtgagtttagctcggttggtatgaacaatgcataatatatgtaaggtttggggtttaaacctcg 32957541  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 28200452 - 28200406
Alignment:
Q  213 gtcatcgtaagcttacctcagttgataggaacaatacataatatatg 259  Q
    |||||||| |||||| |||||||| ||||||||||||||||||||||    
T  28200452 gtcatcgtgagcttaactcagttggtaggaacaatacataatatatg 28200406  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 2622323 - 2622366
Alignment:
Q  217 tcgtaagcttacctcagttgataggaacaatacataatatatgt 260  Q
    |||| |||||| || |||||||||||||||||||||||||||||    
T  2622323 tcgtgagcttagcttagttgataggaacaatacataatatatgt 2622366  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 265
Target Start/End: Complemental strand, 43539162 - 43539119
Alignment:
Q  222 agcttacctcagttgataggaacaatacataatatatgttaggt 265  Q
    |||||| ||||||||||||||||||| |||||||||||| ||||    
T  43539162 agcttagctcagttgataggaacaatgcataatatatgtaaggt 43539119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 25602911 - 25602957
Alignment:
Q  213 gtcatcgtaagcttacctcagttgataggaacaatacataatatatg 259  Q
    ||||||||||||||| |||| |||||| ||||||| |||||||||||    
T  25602911 gtcatcgtaagcttagctcaattgataagaacaatgcataatatatg 25602957  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 38779983 - 38780029
Alignment:
Q  222 agcttacctcagttgataggaacaatacataatatatgttaggtttg 268  Q
    |||||| |||||||| ||||||||||| ||||||||||| |||||||    
T  38779983 agcttaactcagttggtaggaacaataaataatatatgtaaggtttg 38780029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 1285135 - 1285090
Alignment:
Q  214 tcatcgtaagcttacctcagttgataggaacaatacataatatatg 259  Q
    ||||||| || ||| ||||||||||||||||||| |||||||||||    
T  1285135 tcatcgtgagtttaactcagttgataggaacaatgcataatatatg 1285090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 45645292 - 45645251
Alignment:
Q  224 cttacctcagttgataggaacaatacataatatatgttaggt 265  Q
    |||| ||||||||||| |||||||||||||||||||| ||||    
T  45645292 cttagctcagttgataagaacaatacataatatatgtaaggt 45645251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 1230712 - 1230668
Alignment:
Q  229 ctcagttgataggaacaatacataatatatgttaggtttgaggtt 273  Q
    |||||||| |||||||||| |||||||||||| ||||||||||||    
T  1230712 ctcagttggtaggaacaatgcataatatatgtaaggtttgaggtt 1230668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 11771705 - 11771747
Alignment:
Q  217 tcgtaagcttacctcagttgataggaacaatacataatatatg 259  Q
    ||||||||||| ||||||||||||  |||||||||||||||||    
T  11771705 tcgtaagcttagctcagttgatagagacaatacataatatatg 11771747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 29716767 - 29716721
Alignment:
Q  213 gtcatcgtaagcttacctcagttgataggaacaatacataatatatg 259  Q
    |||||||| |||||| |||||||| |||||||||| |||||||||||    
T  29716767 gtcatcgtgagcttaactcagttggtaggaacaattcataatatatg 29716721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 8020308 - 8020357
Alignment:
Q  217 tcgtaagcttacctcagttgataggaacaatacataatatatgttaggtt 266  Q
    ||||||||||| |||||||| |||||||||  |||||||||||| |||||    
T  8020308 tcgtaagcttagctcagttggtaggaacaacgcataatatatgtaaggtt 8020357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 18422516 - 18422467
Alignment:
Q  217 tcgtaagcttacctcagttgataggaacaatacataatatatgttaggtt 266  Q
    |||||||||||  ||||||||||| |||||| |||||||||||| |||||    
T  18422516 tcgtaagcttaattcagttgatagaaacaatgcataatatatgtaaggtt 18422467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 2705567 - 2705523
Alignment:
Q  229 ctcagttgataggaacaatacataatatatgttaggtttgaggtt 273  Q
    ||||||||||| |||||||||||||||||||| |||| |||||||    
T  2705567 ctcagttgataagaacaatacataatatatgtaaggtctgaggtt 2705523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 40782350 - 40782402
Alignment:
Q  213 gtcatcgtaagcttacctcagttgataggaacaatacataatatatgttaggt 265  Q
    |||||||| |||||| ||||||  |||||||||||||||||||||||| ||||    
T  40782350 gtcatcgtgagcttaactcagtcaataggaacaatacataatatatgtaaggt 40782402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 6094240 - 6094184
Alignment:
Q  217 tcgtaagcttacctcagttgataggaacaatacataatatatgttaggtttgaggtt 273  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||| | || |||||||    
T  6094240 tcgtaagcttaactcggttgatagaaacaatacataatatatgtaatgtctgaggtt 6094184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 52936644 - 52936695
Alignment:
Q  222 agcttacctcagttgataggaacaatacataatatatgttaggtttgaggtt 273  Q
    |||||| |||||||||||| ||||||  ||||||||||| ||||||||||||    
T  52936644 agcttaactcagttgatagaaacaatgtataatatatgtaaggtttgaggtt 52936695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 11949726 - 11949685
Alignment:
Q  217 tcgtaagcttacctcagttgataggaacaatacataatatat 258  Q
    |||| |||||| ||||||||||| ||||||||||||||||||    
T  11949726 tcgtgagcttagctcagttgataagaacaatacataatatat 11949685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 20403226 - 20403189
Alignment:
Q  222 agcttacctcagttgataggaacaatacataatatatg 259  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  20403226 agcttagctcagttgataggaacaatgcataatatatg 20403189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 39842068 - 39842019
Alignment:
Q  224 cttacctcagttgataggaacaatacataatatatgttaggtttgaggtt 273  Q
    |||| ||||||||||| | ||||| |||||||||||| ||||||||||||    
T  39842068 cttaactcagttgataaggacaatgcataatatatgtaaggtttgaggtt 39842019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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