View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3467_high_3 (Length: 646)
Name: NF3467_high_3
Description: NF3467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3467_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 38005421 - 38005128
Alignment:
| Q |
18 |
ggtgaagagtttgttaagagcggtagggttccaatgccatgggaattgttgcaaccagttttgagaatattgggacattgtttgttgggtccaaataaca |
117 |
Q |
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| T |
38005421 |
ggtgaagagtttgttaagagcggtagggttccaatgccatgggaattgttgcaaccagttttgagaatattgggacattgtttgttgggtccaaataaca |
38005322 |
T |
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| Q |
118 |
gggatacaatgttgtttgagaatgcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggag |
217 |
Q |
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| T |
38005321 |
gggatacaatgttgtttgagaatgcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggag |
38005222 |
T |
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| Q |
218 |
cttgttgaggctttctaaaaatgttaatgttgatgattttgatccaactgaaccacctaagactgatgttatcactctttagtactttatggtg |
311 |
Q |
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| T |
38005221 |
cttgttgaggctttctaaaaatgttgatgttgatgattttgatccaactgaaccacctaagactgatgttatcactctttagtactttatggtg |
38005128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 387 - 632
Target Start/End: Complemental strand, 38005056 - 38004811
Alignment:
| Q |
387 |
gaggcatgatggattgagtatttgtggggatcgatgattctaattcaagttaattgacaattgaattttattttagtgggagtcaatataattggttttc |
486 |
Q |
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| T |
38005056 |
gaggcatgatggattgagtatttttggggatcgatgattctaattcaagttaattgacaattgaattttattttagtgggagtcaatataattggttttc |
38004957 |
T |
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| Q |
487 |
aaagtttcattgtggtgaaatttcacttttggttccaacnnnnnnnttcagcagatattgtaattgagaataattatggatgttaaatttacttttgttc |
586 |
Q |
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| T |
38004956 |
aaagtttcattgtggtgaaatttcacttttggttccaacaaaaaaattcagcagatattgtaattgagaatagttatggatgttaaatttacttttgttc |
38004857 |
T |
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| Q |
587 |
ttatcagacgttatcatcattccgtaagatttcatgtgttcctctc |
632 |
Q |
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| T |
38004856 |
ttatcagacgttatcatcattccgtaagatttcttgtgttcctctc |
38004811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 26462369 - 26462679
Alignment:
| Q |
1 |
ttgaaatagagaaagaaggtgaagagtttgttaagagcggtagggttccaatgccatgggaattgttgcaaccagttttgagaatattgggacattgttt |
100 |
Q |
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| T |
26462369 |
ttgaaatagataaagaaggtgaagagtttgttaagacgggtagggttccaatgccatgggaattgttacaaccagttttgagaatattgggacattgttt |
26462468 |
T |
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| Q |
101 |
gttgggtccaaataacagggatacaatgttgtttgagaatgcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagct |
200 |
Q |
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| T |
26462469 |
gttgggaccaaataacaaggatacaatgttgtttgagaaagcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagct |
26462568 |
T |
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| Q |
201 |
attttacctatgaggagcttgttgaggctttctaaaaatgttaatgttgatgattttgatccaactgaaccacctaagactgatgttatcactctttagt |
300 |
Q |
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| T |
26462569 |
attttacctatgaggagcttgttgagactttctaaaaatgttgttgttgatgattttgatccaactgaaccacccaagactgatgttatcactctttagt |
26462668 |
T |
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| Q |
301 |
actttatggtg |
311 |
Q |
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| T |
26462669 |
actttatggtg |
26462679 |
T |
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