View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3467_high_4 (Length: 440)
Name: NF3467_high_4
Description: NF3467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3467_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 34675259 - 34675676
Alignment:
| Q |
16 |
atctttgcaccatactttccaccggaagaacctcaaaaatttgcaaacgttcacaagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcc |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34675259 |
atctttgcaccatactttccaccggaagaacctcaaaaatttgcaaacgttcacaagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcc |
34675358 |
T |
|
| Q |
116 |
tccctcaccagagagaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggtgctatctctttcct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34675359 |
tccctcaccagagagaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggtgctatctctttcct |
34675458 |
T |
|
| Q |
216 |
tcagagacaagttcagagacttcaaaaggaacttgattctgctaatgccgatcttcttcgctttgcttacaatgaaatctctccgaatacctctcttcca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34675459 |
tcagagacaagttcagagacttcaaaaggaacttgattctgctaatgccgatcttcttcgctttgcttacaatgaaatctctccgaattcctctcttcca |
34675558 |
T |
|
| Q |
316 |
cctcttcctcctcttgttgttccggcttcgtttcatcaatctcaaagacagtttagttcaagatttggtaatggaaatgttgatggaaatggattttact |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34675559 |
cctcttcctcctcttgttgttccggcttcgtttcatcaatctcaaagacagtttagttcaagatttggtaatggaaatgttgatggaaatggattttact |
34675658 |
T |
|
| Q |
416 |
cttcttttccctatgcta |
433 |
Q |
| |
|
|||||||||| ||||||| |
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| T |
34675659 |
cttcttttccttatgcta |
34675676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 33246367 - 33246317
Alignment:
| Q |
151 |
gcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggt |
201 |
Q |
| |
|
||||||||||| || || ||| ||||||||||||||||||||||||||||| |
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|
| T |
33246367 |
gcttatgaagcagaagcgcgtttgagagatcctgtttatggttgtgttggt |
33246317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 43583248 - 43583509
Alignment:
| Q |
16 |
atctttgcaccatactttccaccggaagaacctcaaaaatttgcaaacgttcacaagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcc |
115 |
Q |
| |
|
||||||||||| ||||| || || ||||| |||||||||||||||||||| ||||| || || || || ||||| ||||||||| | ||||| ||||| | |
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| T |
43583248 |
atctttgcaccttacttccctccagaagagcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaacttc |
43583347 |
T |
|
| Q |
116 |
tccctcaccagagagaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggtgctatctctttcct |
215 |
Q |
| |
|
|||||||||| || || ||||| ||||| |||||||||||||||||||| ||||| || || ||||| |||||||| ||||| || || |||||||| || |
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|
| T |
43583348 |
tccctcaccaaagggaggatgctgtgaactcccttgcttatgaagccgaagcacgagttagggatccagtttatggatgtgtaggagccatctcttttct |
43583447 |
T |
|
| Q |
216 |
tcagagacaagttcagagacttcaaaaggaacttgattctgctaatgccgatcttcttcgct |
277 |
Q |
| |
|
|| ||||||||||| || |||||||||||||| || ||||||| ||||||||||||||| |
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|
| T |
43583448 |
acaaagacaagttcaaaggcttcaaaaggaactcgacgctgctaacaccgatcttcttcgct |
43583509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 15262643 - 15262826
Alignment:
| Q |
19 |
tttgcaccatactttccaccggaagaacctcaaaaatttgcaaacgttcacaagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcctcc |
118 |
Q |
| |
|
|||||||| || |||||||| || | || |||||||||||||| ||||| | || || || |||||||| || |||||| | ||||| || | | || |
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| T |
15262643 |
tttgcaccttattttccacctgatcagccacaaaaatttgcaaatgttcatagaatttttggagcaagcaatgttacaaagcttctcaatgatttacacc |
15262742 |
T |
|
| Q |
119 |
ctcaccagagagaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggtg |
202 |
Q |
| |
|
||||||| | |||||||| |||||||| |||||||||||||| ||| || | ||||||||||||||||||||||||||| |
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|
| T |
15262743 |
ctcaccaacgtgaagatgctgtgaattcacttgcttatgaagctgagatgcgacttcgagatcctgtttatggttgtgttggtg |
15262826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 12360843 - 12360610
Alignment:
| Q |
19 |
tttgcaccatactttccaccggaagaacctcaaaaatttgcaaacgttcacaagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcctcc |
118 |
Q |
| |
|
||||| ||||| || ||||| |||||||| |||||||||||||| |||||||| || || || |||||||| || | || | || || ||| | | | |
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| T |
12360843 |
tttgctccatatttcccaccagaagaaccacaaaaatttgcaaatgttcacaaaatatttggtgcaagcaatgtaagtaaacttctgaatgaagtgcaac |
12360744 |
T |
|
| Q |
119 |
ctcaccagagagaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggtgctatctctttccttca |
218 |
Q |
| |
|
| || || || |||||||||||||| || |||||||||||||| |||||| | | | |||||| ||||||||||| || ||||| || || |||| || |
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| T |
12360743 |
cacatcaaagggaagatgcagtgaactctcttgcttatgaagctgaggcaaggataaaagatccagtttatggttgcgtcggtgccatttcagtcctcca |
12360644 |
T |
|
| Q |
219 |
gagacaagttcagagacttcaaaaggaacttgat |
252 |
Q |
| |
|
||||||||| || || ||||||||||||||| |
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|
| T |
12360643 |
aagacaagttattaggctccaaaaggaacttgat |
12360610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 267
Target Start/End: Original strand, 591287 - 591427
Alignment:
| Q |
127 |
agagaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggtgctatctctttccttcagagacaag |
226 |
Q |
| |
|
||||||||| | |||||||| || ||||||||||| || ||| | | | |||||| || |||||||||||||| ||||| ||| | ||||| |||||| |
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| T |
591287 |
agagaagatacggtgaattctctagcttatgaagctgaagcaaggattaaagatccagtgtatggttgtgttggagctatatctgtgcttcaaagacaac |
591386 |
T |
|
| Q |
227 |
ttcagagacttcaaaaggaacttgattctgctaatgccgat |
267 |
Q |
| |
|
| | | |||||||||||||| ||| || | ||||||||| |
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|
| T |
591387 |
tccttaagcttcaaaaggaactcgatgctacaaatgccgat |
591427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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