View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3467_low_6 (Length: 356)
Name: NF3467_low_6
Description: NF3467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3467_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 128 - 342
Target Start/End: Original strand, 18542369 - 18542584
Alignment:
| Q |
128 |
atcaaataataaaataggttggg-atatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacggaatcaagggccttcatgaaat |
226 |
Q |
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| T |
18542369 |
atcaaataataaaataggttggggatatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacgaaatcaagggccttcatgaaat |
18542468 |
T |
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| Q |
227 |
ccagatgaatgaatgtgtctattcctttccattaagtatgtaaaataaaaccataaactctcttttattccttgtctaatctataatatgatgaacatca |
326 |
Q |
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| T |
18542469 |
ccagatgaatgaatgtgtctattcctttctattaagtatgtaaaataaaaccataaactctcttttattccttgtctagtctataatatgatgaacatca |
18542568 |
T |
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| Q |
327 |
ttatttaaattagttt |
342 |
Q |
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|||| ||||||||||| |
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| T |
18542569 |
ttatctaaattagttt |
18542584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 131 - 275
Target Start/End: Original strand, 18555430 - 18555575
Alignment:
| Q |
131 |
aaataataaaataggttggg-atatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacggaatcaagggccttcatgaaatcca |
229 |
Q |
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| T |
18555430 |
aaataataaaataggttggggatatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaagggaatcaagggccttcatgaaatcca |
18555529 |
T |
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| Q |
230 |
gatgaatgaatgtgtctattcctttccattaagtatgtaaaataaa |
275 |
Q |
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| T |
18555530 |
gatgaatgaacgtgtctattcctttccattaagtatgtaaaataaa |
18555575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 131 - 287
Target Start/End: Original strand, 18550452 - 18550609
Alignment:
| Q |
131 |
aaataataaaataggttggg-atatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacggaatcaagggccttcatgaaatcca |
229 |
Q |
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| T |
18550452 |
aaataataatattggttggggatatttgaaaaattagggaggttacaattgtgacataagtagcaaaagtgaagggaatcaagagcctccatgaaatcca |
18550551 |
T |
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| Q |
230 |
gatgaatgaatgtgtctattcctttccattaagtatgtaaaataaaaccataaactct |
287 |
Q |
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| T |
18550552 |
gatgaatgaatgtgtctattcattcccataaagcatgtaaaataaaaccataaactct |
18550609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 18542268 - 18542350
Alignment:
| Q |
15 |
aggaggaaatggcagtgaaggaggtgcacaaggtggaggtggacaaatcgaaggtggaaacgataaagaaagtgaacttgatg |
97 |
Q |
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| T |
18542268 |
aggaggaaatggtagtgaaggaggtgcacaaggtggaggtgaacaaatcgaaggtggaaacgataaagaaagtgaacttgatg |
18542350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 267 - 342
Target Start/End: Original strand, 18555865 - 18555940
Alignment:
| Q |
267 |
taaaataaaaccataaactctcttttattccttgtctaatctataatatgatgaacatcattatttaaattagttt |
342 |
Q |
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| T |
18555865 |
taaaataaaaccataaactcttttttattccttgtctagtctataatatgatgaacatctttatctaaattagttt |
18555940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 18550361 - 18550430
Alignment:
| Q |
29 |
gtgaaggaggtgcacaaggtggaggtggacaaatcgaaggtggaaacgataaagaaagtgaacttgatgc |
98 |
Q |
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| T |
18550361 |
gtgaaggaggtgcgcaaggtggaggtggacaaatcgaaggtggaaaagacaaaggaagtggacttgatgc |
18550430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 18555325 - 18555408
Alignment:
| Q |
15 |
aggaggaaatggcagtgaaggaggtgcacaaggtggaggtggacaaatcgaaggtggaaacgataaagaaagtgaacttgatgc |
98 |
Q |
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| T |
18555325 |
aggaggaaatggcggtgaaggaggtgcacaaggtggaggtagaaaaatcagaggtggaagtgacaaagaaagtggacttgatgc |
18555408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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