View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3468_high_1 (Length: 1161)
Name: NF3468_high_1
Description: NF3468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3468_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Original strand, 9247738 - 9248281
Alignment:
| Q |
1 |
acctcgtgatcaatcaaggacaatctgtcattgcagccacacatctgacaaactaattttgtttcttcttatgttgcaaaatgcatgtaatgaaaacctt |
100 |
Q |
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| T |
9247738 |
acctcatgatcaatcaaggacaatctgtcattgcagccacgcatctgacaaactaattttgtttcttcttatgttgcaaaatgcatgtaatgaaaacctt |
9247837 |
T |
|
| Q |
101 |
gcattgtattttaagttggaattgcaaacattgtttttcggtaaccagattccaggtacaaactatctactgccgcttaacagcgtctgatctccgttta |
200 |
Q |
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| T |
9247838 |
gcattgtattttaagttggaattgcaaacattgtttttcagtaaccagattccaggtacaaactatctactgccgcttaacagcgtctgatctccgttta |
9247937 |
T |
|
| Q |
201 |
acagtgttttctataaataagagtcaggattttcacctctaaccactatcttaagttgtttgagttccttaccactcagatgaacttgtcgaaagaaatg |
300 |
Q |
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| T |
9247938 |
acagtgttttctataaataagagtcaggattttcacctctaaccactatcttaagttgtttgagttccttaccactcagatgaacttgtcgaaagaaatg |
9248037 |
T |
|
| Q |
301 |
catgcatagtaatatactttcaattacataaatttaaccctgttaatatctacatcagcttaaccattccaccattttactgtaagtacaataaactatg |
400 |
Q |
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| T |
9248038 |
catgcatagtaatatactttcaattacataaatttaaccctgttaatatctacatcagcttaaccattctaccattttactgtaagtacaataaactatg |
9248137 |
T |
|
| Q |
401 |
gtatcaatcaaccactttatataatttcaaagaaatcattcattcataaagttaaataaatttgctgtgacaattaacactgagaagataaatgagaatc |
500 |
Q |
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| T |
9248138 |
gtatcaatcaaccactttatataatttcaaagaaatcattcattcataaagttaaataaatttgctgtgacaattaacactgagaagataaatgagaatc |
9248237 |
T |
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| Q |
501 |
ttctataccagagacacaaacaaacactaaacatacatgattag |
544 |
Q |
| |
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| T |
9248238 |
ttctataccagagacacaaacaaacactaaacatacatgattag |
9248281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 774 - 1083
Target Start/End: Original strand, 9248518 - 9248827
Alignment:
| Q |
774 |
tcatgttctaagaacaatagagatataaaaaattgacctggcactaggtacccttgtaggaacctcaggctgaaactcagaaggcaaaccaagaaaacca |
873 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9248518 |
tcatgttctaagaacaatagagatataaaaaattgacctggcactaggtacccttgtaggaacctcaggctgaaactcagaaggcaaaccaagaaaacca |
9248617 |
T |
|
| Q |
874 |
ttgaatctatcaaaagtaacatgtgacacgtgtctcacttcagttggccagctaatatctaaggaagaaacatcctccctctccacactgcaagttacaa |
973 |
Q |
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| T |
9248618 |
ttgaatctatcaaaagtaacatgtgacacgtgtctcacttcagttggccagctaatatctaaggaagaaacatcctccctctccacactgcaagttacaa |
9248717 |
T |
|
| Q |
974 |
tagatttcttaagagcagccataactatatccaatattgcaaactggttgtgatgattgttgttggatccttttgtaaattgtcttgaagcattgttgct |
1073 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9248718 |
tagatttcttaagagcagccataactatatccaatattgcaaactggttttgatgattgttgttggatccttttgtaaattgtcttgaagcattgttgct |
9248817 |
T |
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| Q |
1074 |
tgaatatatc |
1083 |
Q |
| |
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|||||||||| |
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| T |
9248818 |
tgaatatatc |
9248827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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