View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3468_high_2 (Length: 728)
Name: NF3468_high_2
Description: NF3468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3468_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 131 - 721
Target Start/End: Original strand, 36635696 - 36636286
Alignment:
| Q |
131 |
gcatgtttcagaaacacaatgcatcagatccaaaaaccggtaaatcagattcagattgagatcgaatcaagcaccggcgcctgcaccagcaccaggacca |
230 |
Q |
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| T |
36635696 |
gcatgtttcagaaa-acaatgcatcagatccaaaaaccggttaatcagattcagattgagatcgaatcaagcaccggcgcctgcaccagcaccaggacca |
36635794 |
T |
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| Q |
231 |
gattggtaacggtagagtttgccaaaaacatggagcatggtgacgaaaccaatgaagccgagactcatcacgagaaccaccgtcggagaaatcttcaaac |
330 |
Q |
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| T |
36635795 |
gattgataacggtagagtttgccaaaaacatggagcatggtgacgaaaccaatgaagccgagactcatcacgagaaccaccgtcggagaaatcttcaaac |
36635894 |
T |
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| Q |
331 |
caggtgcatcgtcagtgtagaatcgcagcatgttgttccctccgctggagcttcctgcggcagaggtggagctggtagtgtttccacctgttgggcggcg |
430 |
Q |
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| T |
36635895 |
caggtgcatcgtcggtgtagaatcgcagcatgttgttccctccgctggagcttcctgcggcagaggtggagctggtagtgtttccacctgttggacggcg |
36635994 |
T |
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| Q |
431 |
acgacgcataccggctgtagcggcagcggagccgcgtggtgccatgacacctggtcgtgtcgtggcaccggaagatgcagattgagatgattgagaggcg |
530 |
Q |
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| T |
36635995 |
acgacgcataccggctgtagcggcagcggagccgcgtggtgccatgacacctggtcgtgtcgtggcaccggaagatgcagattgagatgattgagaggcg |
36636094 |
T |
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| Q |
531 |
gttcttgccattgcgtggcagtgaagaaaacgagagaagaacggagatgaacnnnnnnnntaggagagaaagatgtagaaataaatggtagtagtttgaa |
630 |
Q |
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| T |
36636095 |
gttcttgccattgcgtggcagtgaagaaaacgagagaagaacggagatgaagaaaaaaaataggagagaaagatgtagaaataaatggtagtagtttgaa |
36636194 |
T |
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| Q |
631 |
tgaaaggggattaatgaataaaacaaatta-ttactaaaaatggaattttatggtgttgtaaaaatactaatcaatattaaccttcatttca |
721 |
Q |
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| T |
36636195 |
tgaaaggggattaatgaataaaacaaattatttactaaaaatggaattttatggtgttgtaaaaatactaatcaatattaaccttcaattca |
36636286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36635566 - 36635638
Alignment:
| Q |
1 |
caaaattgacttgcattaacatcaaggagatacaatcatttcagagctagaaaatagaaagcctaatcaagct |
73 |
Q |
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| T |
36635566 |
caaaattgacttgcattaacatcaaggagatacaatcatttcagagctagaaaatagaaagcctaatcaagct |
36635638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 269 - 376
Target Start/End: Complemental strand, 39998575 - 39998468
Alignment:
| Q |
269 |
ggtgacgaaaccaatgaagccgagactcatcacgagaaccaccgtcggagaaatcttcaaaccaggtgcatcgtcagtgtagaatcgcagcatgttgttc |
368 |
Q |
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| T |
39998575 |
ggtgacgaaaccaatgaagcagagactcataaccaaaacaaccgtaggagaaatcttcaaaccaggtgcatcatcagtgtagaatctcagcatgttgctt |
39998476 |
T |
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| Q |
369 |
cctccgct |
376 |
Q |
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| T |
39998475 |
cctccgct |
39998468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 469
Target Start/End: Complemental strand, 39998424 - 39998381
Alignment:
| Q |
426 |
cggcgacgacgcataccggctgtagcggcagcggagccgcgtgg |
469 |
Q |
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| T |
39998424 |
cggcgacgacgcatgccggcagtggcggcagcggagccgcgtgg |
39998381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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