View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3468_high_3 (Length: 603)
Name: NF3468_high_3
Description: NF3468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3468_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 136 - 588
Target Start/End: Complemental strand, 45642159 - 45641707
Alignment:
| Q |
136 |
gccataccaatctatgacccaagtatacaatccagaatgcaaattttgtttctaagttctctacagctttccaaatatatgaagattaaaatatgtgagg |
235 |
Q |
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| T |
45642159 |
gccataccaatctatgagccaagtatacaatccagaatgcaaattttgtttctaagttctctacagctttccaaatatatgaagattaaaatatgtgagg |
45642060 |
T |
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| Q |
236 |
cattaacatatatcctcaaaaacatatacataagaatcagagcatgccactcaatccaactaaacaacagtaacaaagacttgtgtttcagttgctaatt |
335 |
Q |
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| T |
45642059 |
cattaacatatatcctcaaaaacatatacataagaatcagagcatgccactcaatccaactgaacgacagtaacaaagacttgtgtttcagttgctaatt |
45641960 |
T |
|
| Q |
336 |
ttataaataacaatgactcaaaacatgaatgaaaaagatgtgtacatgaggaaaccaatcaaaaatttcaaacagctaacaaagagattatgaatatagc |
435 |
Q |
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| T |
45641959 |
ttataaataacaatgactcaaaacatgaatgaaaaagatgagtacatgaggaaaccaatcaaaaatttcaaacagctaacaaagagattatgaatatagc |
45641860 |
T |
|
| Q |
436 |
agggaattcagtttttatatacacaatacaccacttctcggacgatcaaaagaggtaggacaagtagaggttcctgaatgtcaaggattccaattttcat |
535 |
Q |
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| T |
45641859 |
agggaattcagtttttatatacacaatacaccacttctcggacgatcaaaagaggtaggacaagtagaggttcctgaatgtcaaggattccaattttcat |
45641760 |
T |
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| Q |
536 |
ccacctctttcaaaccaacagctgatcaagcagttctcaccctttcatatttt |
588 |
Q |
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| T |
45641759 |
ccacctctttcaaaccaacagctgatcaagcagttctcaccctttcatatttt |
45641707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 45642286 - 45642222
Alignment:
| Q |
9 |
agcagagaacaatagaatactgattgcatagttattatcattggaaccctttaatgtcatcagtc |
73 |
Q |
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| T |
45642286 |
agcagagaacaatagaatactgattgcatagttattatcattggaaccctttaatgtcatcagtc |
45642222 |
T |
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