View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3468_high_8 (Length: 342)
Name: NF3468_high_8
Description: NF3468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3468_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 2737022 - 2736709
Alignment:
| Q |
11 |
cagagacattagctttaactattgacaagtgcaaagtatataatgaacataatagcaaattaagattttatattacgaaacacatggtcaatacactggc |
110 |
Q |
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| T |
2737022 |
cagagacattagctttaactattgacgagtgcaaagtatataatgaacataatagcaaattaagattttatattacgaaacacatggtcaaaacactggc |
2736923 |
T |
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| Q |
111 |
agttacattgaaagccagagactgacatcatctataacacattttgcaaataaaagtataatttgaatgcaagagacataataagctcaccagactctta |
210 |
Q |
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| T |
2736922 |
agttacattgaaagccagagactgacatcaactataacacattttgcaaataaaagtataatttgaatgcaagagacataataagctcaccagactctta |
2736823 |
T |
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| Q |
211 |
aaatcagcagccattaaactagcgttactcttcttcctgacgagaacactgacattgaacacaacaagcatacacgtcatttatacaaagtgtttggttc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
2736822 |
aaatcagcagccattaaactagcgttactcttcttcctgacgagaacactggcattgaacaaaacaatcatacacgtcatttatacaaagtgtttggttc |
2736723 |
T |
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| Q |
311 |
aaaagagggtaatg |
324 |
Q |
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|||||||||||||| |
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| T |
2736722 |
aaaagagggtaatg |
2736709 |
T |
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