View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3468_low_10 (Length: 333)
Name: NF3468_low_10
Description: NF3468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3468_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 2737592 - 2737271
Alignment:
| Q |
12 |
atgaaacacacatcaggagaaaccagattatattcaaaagggacgccaataacaagacccttcaaggaatatttagagatctgcatgaaaacagaggaaa |
111 |
Q |
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| T |
2737592 |
atgaaacacacatcaggagaaaccagattatattcaaaagggacgccaataacaagacccttcaaggaatatttagagatctgcatgaaaacagaggaaa |
2737493 |
T |
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| Q |
112 |
ttgtcatagcacatcttaggattattatgacttaaatagttaagagtagtaccaataatgaatgataaaaatataaatacacaatatacctatgcatacc |
211 |
Q |
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| T |
2737492 |
ttgtcatagcacatcttaggattattatgacttaaatagttaagagtagtaccaataatgaatgatcaaaataaagatacacaatatacctatgcatact |
2737393 |
T |
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| Q |
212 |
gcacaacttataccatcataattgtgnnnnnnnttaaaccaaggctaagggttaacaaacaaaaaagtgaaacaagactacactaataattttttacttc |
311 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2737392 |
gcacaacttataccatcataattgtgaaaaaaattaaaccaaggctaagggttaacaaacaaaaaagtgaaacaagactacactaatgattttttacttc |
2737293 |
T |
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| Q |
312 |
atagcatacttttgagagtaac |
333 |
Q |
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| T |
2737292 |
atagcatacttttgagtgtaac |
2737271 |
T |
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