View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3468_low_11 (Length: 310)
Name: NF3468_low_11
Description: NF3468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3468_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 31 - 291
Target Start/End: Complemental strand, 55337457 - 55337201
Alignment:
| Q |
31 |
taatttcacatgacatgaactcattagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggt |
130 |
Q |
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| T |
55337457 |
taatttcacatgacatgaactcattagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggt |
55337358 |
T |
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| Q |
131 |
atctaagaacctatttgtttaatacctcccataactc-ttgtcttaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcacaa |
229 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55337357 |
atctaagaacctatttgtttaatacctcccataactctttgtactaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcaca- |
55337259 |
T |
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| Q |
230 |
tagtatagtatatatataaacctttcctcactaacactaaacacaaagcaaaacataattaa |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
55337258 |
----atagtatatatataaacctttcctcactaacactaaacacaaatcaaaacataattaa |
55337201 |
T |
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