View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3468_low_5 (Length: 393)
Name: NF3468_low_5
Description: NF3468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3468_low_5 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 55336610 - 55336984
Alignment:
| Q |
19 |
ttgagtccatagttgtttgaacaatcttgtagcactgcgctgttcctcagcgagctgcgaaggctgaatcttgttcatgataagcaacatacaagttgct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
55336610 |
ttgagtccatagttgtttgaacaatcttgtagcattgcgctgttcctcagcgagctgcgaaggctgaatcttgttcatgataagcaacataccagttgct |
55336709 |
T |
|
| Q |
119 |
gctgaaaacagaagagtggatgatagtttcagagccaacagttgtgcaccatcagcaccagttgcggctgcaataccagttaatgttgtagcagtgagtg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
55336710 |
gctgaaaacagaagagtggatgatagtttcagagccaacagttgtgcaccatcagcaccagttgcggctgcaatacaagttaatgttgtagcagtgagtg |
55336809 |
T |
|
| Q |
219 |
taatcatgttaatgttgtttagaagtaggttgttccaattttgacgctgttcgcagatgtttttgtgcatttcaattctgtcagatacagaatctaagat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55336810 |
taatcatgttaatgttgtttagaagtaggttgttccaattttgacgctgttcgccgatgtttttgtgcatttcaattctgtcagatacagaatctaagat |
55336909 |
T |
|
| Q |
319 |
agcatagagttgcacggtgttggagttattgattgtagaattggattaatcatggtgtaaattatgtgtcctatt |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
55336910 |
agcatagagttgcacggtgttggagttattgattgaagaattggataaatcatggtgtaaattatgtgtcctatt |
55336984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 32 - 332
Target Start/End: Original strand, 55331185 - 55331485
Alignment:
| Q |
32 |
tgtttgaacaatcttgtagcactgcgctgttcctcagcgagctgcgaaggctgaatcttgttcatgataagcaacatacaagttgctgctgaaaacagaa |
131 |
Q |
| |
|
|||||||| ||||||||||| | | ||||| || ||||| |||||||||||||| |||||||| ||||| | |||| || ||||| ||||| | || |
|
|
| T |
55331185 |
tgtttgaataatcttgtagcgtttctttgttcttccgcgagttgcgaaggctgaattttgttcataataagaagtatacttgtagctgcagaaaataaaa |
55331284 |
T |
|
| Q |
132 |
gagtggatgatagtttcagagccaacagttgtgcaccatcagcaccagttgcggctgcaataccagttaatgttgtagcagtgagtgtaatcatgttaat |
231 |
Q |
| |
|
| |||||||||||||| |||||||| ||| | | ||| ||||||| |||| || ||| ||| ||||||||||||||||| ||||| |||||||| || |
|
|
| T |
55331285 |
gtgtggatgatagtttaagagccaaaagtggggtgccaatagcaccacttgcagccacaacaccggttaatgttgtagcagtaagtgtgatcatgttgat |
55331384 |
T |
|
| Q |
232 |
gttgtttagaagtaggttgttccaattttgacgctgttcgcagatgtttttgtgcatttcaattctgtcagatacagaatctaagatagcatagagttgc |
331 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||| || || ||| ||||||||||| |||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
55331385 |
gttgtttagaagtaggttgttccaattctgtcgctgttggctgaggttgttgtgcatttcgattctgtcggatacagaatctaaaattgcatagagttgc |
55331484 |
T |
|
| Q |
332 |
a |
332 |
Q |
| |
|
| |
|
|
| T |
55331485 |
a |
55331485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 8406246 - 8406322
Alignment:
| Q |
29 |
agttgtttgaacaatcttgtagcactgcgctgttcctcagcgagctgcgaaggctgaatcttgttcatgataagcaa |
105 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||||| | ||| || || || || || ||||||||||||||||| |
|
|
| T |
8406246 |
agttgtttgaacaatcttgtagcatttctttgttcctctgtgagttgagagggttggattttgttcatgataagcaa |
8406322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University