View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3468_low_6 (Length: 369)

Name: NF3468_low_6
Description: NF3468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3468_low_6
NF3468_low_6
[»] chr5 (4 HSPs)
chr5 (19-352)||(9197818-9198152)
chr5 (26-152)||(26449066-26449190)
chr5 (38-129)||(32528994-32529083)
chr5 (91-146)||(3522516-3522571)
[»] chr1 (3 HSPs)
chr1 (26-146)||(42471282-42471404)
chr1 (90-145)||(44108879-44108934)
chr1 (38-129)||(5715034-5715123)
[»] chr8 (3 HSPs)
chr8 (20-167)||(33304060-33304205)
chr8 (220-281)||(32897512-32897574)
chr8 (26-146)||(32897613-32897731)
[»] chr2 (3 HSPs)
chr2 (49-150)||(40626995-40627094)
chr2 (48-152)||(19427141-19427243)
chr2 (90-148)||(29463222-29463280)
[»] scaffold0377 (1 HSPs)
scaffold0377 (90-152)||(11929-11991)
[»] chr7 (2 HSPs)
chr7 (90-152)||(42078130-42078192)
chr7 (90-152)||(37970443-37970505)
[»] chr4 (3 HSPs)
chr4 (90-152)||(14518556-14518618)
chr4 (14-69)||(26634578-26634632)
chr4 (90-151)||(171929-171990)
[»] chr3 (3 HSPs)
chr3 (38-147)||(40417621-40417727)
chr3 (90-145)||(20525556-20525611)
chr3 (43-118)||(48935746-48935819)
[»] chr6 (1 HSPs)
chr6 (58-133)||(31799395-31799468)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 9198152 - 9197818
Alignment:
Q  19 tgataaaattagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgat 118  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  9198152 tgataagattaaaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcatacgttcttggtgcacacatgataaaaaagatgat 9198053  T
Q  119 aatattattttatcatattatgtgtttgatgcacgtgttattaacatgaaggggnnnnnnnn-ttaacaacgctggggcatattcatctccaccatttgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||| |||||||||||||||||||||||||||    
T  9198052 aatattattttatcatattatgtgtttgatgcacgtgttattaacatgaaggaaaaaaagaaattaacaacgttggggcatattcatctccaccatttgc 9197953  T
Q  218 ccccttcgtcattccatcaaccagattcattgtctttgaacaccgccatcgagcctccatcttcagctgatgaaacattgtccccttccacatagcaatc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9197952 ccccttcgtcattccatcaaccagattcattgtctttgaacaccgccatcgagcctccatcttcagccgatgaaacattgtccccttccacatagcaatc 9197853  T
Q  318 gtgtagttttgcccgcataaaaatagctcacaatg 352  Q
    |||||||||||||||||||||||||||||||||||    
T  9197852 gtgtagttttgcccgcataaaaatagctcacaatg 9197818  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 152
Target Start/End: Complemental strand, 26449190 - 26449066
Alignment:
Q  26 attagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatatta 125  Q
    ||||||||||| ||||| ||| |||||||||| || | |||||||||||||| | ||||  | |||||||||||| ||||||| ||||||||||  ||||    
T  26449190 attagaaaatggataaaaatatgatatgatagtgacatgatagacacttatcctatcat--gcttttggtgcacatatgataagaaagatgatatcatta 26449093  T
Q  126 ttttatcatattatgtgtttgatgcac 152  Q
    ||||||| ||| ||||||||| |||||    
T  26449092 ttttatcctatcatgtgtttgttgcac 26449066  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 32528994 - 32529083
Alignment:
Q  38 ataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattatttt 129  Q
    |||||||||||||||||||  |||| |||||||||||||  | ||||  || ||||||||| | ||||||||||| |||||| |||||||||    
T  32528994 ataaagataggatatgatactgatatgatagacacttattctatcat--gtgtttggtgcatagatgataacaaatatgatagtattatttt 32529083  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 3522516 - 3522571
Alignment:
Q  91 ttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttg 146  Q
    ||||||||| |||||||| ||||||||||| ||||||||||| |||  ||||||||    
T  3522516 ttggtgcacgcatgataaaaaagatgataacattattttatcctatcgtgtgtttg 3522571  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 146
Target Start/End: Original strand, 42471282 - 42471404
Alignment:
Q  26 attagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatatta 125  Q
    ||||||||||  ||||||||| |||||||||  |||| |||||||| ||||||| ||||  || ||||||||||||||||||| ||| ||||||  ||||    
T  42471282 attagaaaatagataaagatatgatatgataatgatatgatagacatttatcatatcat--gtgtttggtgcacacatgataagaaatatgatagcatta 42471379  T
Q  126 ttt----tatcatattatgtgtttg 146  Q
    |||    |||||||| |||||||||    
T  42471380 tttatcatatcatatcatgtgtttg 42471404  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 44108934 - 44108879
Alignment:
Q  90 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgttt 145  Q
    ||||| ||||||||||||| ||| ||||||  ||||||||||||||||||||||||    
T  44108934 tttggggcacacatgataataaacatgatagcattattttatcatattatgtgttt 44108879  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 5715034 - 5715123
Alignment:
Q  38 ataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattatttt 129  Q
    ||||||||  || ||||||| | ||||||||| | ||||||| ||||| ||||  ||||||| |||||||| ||| || |||||||||||||    
T  5715034 ataaagatgagacatgatagtggtaagatagatatttatcatatcatatgttt--ggtgcacgcatgataataaatattataatattatttt 5715123  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 33304060 - 33304205
Alignment:
Q  20 gataaaattagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgata 119  Q
    ||||| ||||||||||| |||||||||| ||||||| | |||  |||||||| |||| || | ||  || |||| || ||||||||||| ||||||||||    
T  33304060 gataagattagaaaatggataaagatag-atatgatcgtgatg-gatagacatttattatattat--gtgtttgatgtacacatgataagaaagatgata 33304155  T
Q  120 atattattttatcatattatgtgtttgatg--cacgtgttattaacatga 167  Q
    ||||| ||||||| |||||| | |||||||  ||| ||||||||||||||    
T  33304156 atattgttttatcttattatatatttgatgcacacttgttattaacatga 33304205  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 32897574 - 32897512
Alignment:
Q  220 ccttcgtcattccatca-accagattcattgtctttgaacaccgccatcgagcctccatcttc 281  Q
    ||||| || |||||||| |||| ||||||||||||||| ||||| | ||||||||||||||||    
T  32897574 ccttcctcgttccatcataccaaattcattgtctttgagcaccgtcgtcgagcctccatcttc 32897512  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 32897731 - 32897613
Alignment:
Q  26 attagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatatta 125  Q
    ||||||||||| || |||||| |||| ||||| || | |||||||| ||||| | ||||| |  ||||||||| | ||||||| ||||| ||||| |||     
T  32897731 attagaaaatggatcaagatatgataggatagtgacatgatagacatttatcctatcatacg--tttggtgcagatatgataagaaagaggataacattt 32897634  T
Q  126 ttttatcatattatgtgtttg 146  Q
    ||||||| ||| || ||||||    
T  32897633 ttttatcctatcatatgtttg 32897613  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 40627094 - 40626995
Alignment:
Q  49 atatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgat 148  Q
    |||||||||  | |||||||||||||||||| ||||  || |||||| |||||||||||| || || |||| | ||||||||| |||| |||||||||||    
T  40627094 atatgatagtaacaagatagacacttatcatttcat--gtgtttggtacacacatgataagaaggaggatattcttattttattatatcatgtgtttgat 40626997  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 19427243 - 19427141
Alignment:
Q  48 gatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttga 147  Q
    ||||| |||| |||||||||||||  |||| ||||||| |  ||||||||| | ||||||| ||| ||||||  ||||| |||||||||| ||||||||     
T  19427243 gatatcatagtgataagatagacatctatcgtgtcatacg--tttggtgcatatatgataataaatatgatagcattatgttatcatattttgtgtttgg 19427146  T
Q  148 tgcac 152  Q
    |||||    
T  19427145 tgcac 19427141  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 29463280 - 29463222
Alignment:
Q  90 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgat 148  Q
    ||||||| ||| ||||||| ||||||||||  ||||||||||||||| || ||||||||    
T  29463280 tttggtgtacatatgataagaaagatgatagcattattttatcatatcatatgtttgat 29463222  T

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Target: scaffold0377 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 11991 - 11929
Alignment:
Q  90 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgcac 152  Q
    |||||||||| |||||||  ||| ||||||| ||||||||||||||| |||| ||||||||||    
T  11991 tttggtgcacgcatgataggaaatatgataacattattttatcatatcatgtttttgatgcac 11929  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 42078192 - 42078130
Alignment:
Q  90 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgcac 152  Q
    |||||||||| |||||||| ||| ||||||| ||||||||||||||| || | ||||||||||    
T  42078192 tttggtgcacgcatgataagaaatatgataacattattttatcatatcatatttttgatgcac 42078130  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 37970505 - 37970443
Alignment:
Q  90 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgcac 152  Q
    |||||||||||| |||||| ||||||||||  ||||||||||| ||| ||| ||||| |||||    
T  37970505 tttggtgcacacttgataaaaaagatgatagcattattttatcctatcatgcgtttggtgcac 37970443  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 14518618 - 14518556
Alignment:
Q  90 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgcac 152  Q
    |||| ||| |||| ||||| ||||||||||||||||||||||||||| || |||||| |||||    
T  14518618 tttgatgcgcacaagataagaaagatgataatattattttatcatatcatatgtttggtgcac 14518556  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 26634578 - 26634632
Alignment:
Q  14 agacgtgataaaattagaaaatgaataaagataggatatgatagggataagataga 69  Q
    |||| ||||| |||||||||||| ||||||||| |||||||||| |||||||||||    
T  26634578 agacatgatagaattagaaaatggataaagata-gatatgatagtgataagataga 26634632  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 171929 - 171990
Alignment:
Q  90 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgca 151  Q
    |||| |||||||| ||||||||| || || ||||||||||||||||| |||| ||| |||||    
T  171929 tttgatgcacacaagataacaaatattatcatattattttatcatatcatgtattttatgca 171990  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 40417727 - 40417621
Alignment:
Q  38 ataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattattttatcatatt 137  Q
    |||| |||||||||||| || || | |||| ||| ||||||| ||||| ||||  ||||||| |||||||| ||| ||||||  |||||||||||||||     
T  40417727 ataaggataggatatgacagtgacatgata-acatttatcatatcatatgttt--ggtgcacgcatgataagaaatatgatagcattattttatcatatc 40417631  T
Q  138 atgtgtttga 147  Q
    ||||||||||    
T  40417630 atgtgtttga 40417621  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 20525611 - 20525556
Alignment:
Q  90 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgttt 145  Q
    ||||||||| | ||||||| |||||||||| |||||||||||||||| || |||||    
T  20525611 tttggtgcagatatgataagaaagatgatattattattttatcatatcatatgttt 20525556  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 48935746 - 48935819
Alignment:
Q  43 gataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgat 118  Q
    ||||||||| ||||| || | |||||||||||||| | ||||  || ||||||| ||||||||||| |||||||||    
T  48935746 gataggataggatagtgacatgatagacacttatcctatcat--gtgtttggtgtacacatgataagaaagatgat 48935819  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 31799395 - 31799468
Alignment:
Q  58 ggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattattttatca 133  Q
    ||||| |||||||||||||||| ||||| |||||   |||||| ||||||| ||| |||||| |||||||||||||    
T  31799395 ggataggatagacacttatcatatcatatgtttta--tgcacatatgataagaaatatgatagtattattttatca 31799468  T

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