View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3469_high_2 (Length: 329)
Name: NF3469_high_2
Description: NF3469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3469_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-175; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 10662367 - 10662054
Alignment:
| Q |
1 |
gagttagacttagatggatataacttgcatggattcatatctccccatgttggcaatctctcatttttgataagtctcaaccttgcaaacaatagtttct |
100 |
Q |
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| T |
10662367 |
gagttagacttagatggatataacttgcatggattcatatctccccatgttggcaatctctcttttttgataagtctcaaccttgcaaacaatagtttct |
10662268 |
T |
|
| Q |
101 |
ttggtaaaatcccacatgaactcggtcgattgttccgattgcaggaactcttgattaataacaactccatgacaggggagattcctacaaacttgtcaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10662267 |
ttggtaaaatcccacatgaactcggtcgattgttccgattgcaggaactcttgattaataacaactccatgacaggggagattcctacaaacttgtcaag |
10662168 |
T |
|
| Q |
201 |
ttgctctgatcttgaagtcttatacttacagagaaatcatttggttggtaaaataccaattggcatcagctctcttcataaactacaaatgttggggatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10662167 |
ttgctctgatcttgaagtcttatacttacagagaaatcatttggttggtaaaataccaattggcatcagctctcttcataaactacaaatgttggggatt |
10662068 |
T |
|
| Q |
301 |
tcaaacaacaatct |
314 |
Q |
| |
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|||||||||||||| |
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| T |
10662067 |
tcaaacaacaatct |
10662054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 7190929 - 7191240
Alignment:
| Q |
1 |
gagttagacttagatggatataacttgcatggattcatatctccccatgttggcaatctctcatttttgataagtctcaaccttgcaaacaatagtttct |
100 |
Q |
| |
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|||||| |||| || |||||| | |||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||||| |||||||||||| |
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| T |
7190929 |
gagttaaacttggaaggatatcagctgcatggattgatatctccccatgttggcaatctctcttttttgagaaacctcaaccttgcacacaatagtttct |
7191028 |
T |
|
| Q |
101 |
ttggtaaaatcccacatgaactcggtcgattgttccgattgcaggaactcttgattaataacaactccatgacaggggagattcctacaaacttgtcaag |
200 |
Q |
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| T |
7191029 |
tcggaaaaatcccacagaaactcggtcagttgtttcgattgcaggaactcgtactcattgataactccttgacaggggagattcctacaaacttgacgag |
7191128 |
T |
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| Q |
201 |
ttgctctgatcttgaagtcttatactt-acagagaaatcatttggttggtaaaataccaattggcatcagctctcttcataaactacaaatgttggggat |
299 |
Q |
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||||||| |||||||| |||||||||| || | |||||||| | ||||||||||||||||||| || ||||||||||| || || ||| |||||| ||| |
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| T |
7191129 |
ttgctctaatcttgaattcttatacttgactg-gaaatcatcttattggtaaaataccaattggaataagctctcttcaaaagcttcaagtgttggagat |
7191227 |
T |
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| Q |
300 |
ttcaaacaacaat |
312 |
Q |
| |
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|||||| |||||| |
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| T |
7191228 |
ttcaaaaaacaat |
7191240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 281
Target Start/End: Complemental strand, 10654480 - 10654204
Alignment:
| Q |
5 |
tagacttagatggatataacttgcatggattcatatctccccatgttggcaatctctcatttttgataagtctcaaccttgcaaacaatagtttctttgg |
104 |
Q |
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|
||||||||||||||| ||| ||||||||| |||||||||||||||| ||||||||||| ||||||| || |||| ||||||||| |||||||||||||| |
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| T |
10654480 |
tagacttagatggatttaatttgcatggagtcatatctccccatgtaggcaatctctcttttttgacaaacctcatccttgcaaaaaatagtttctttgg |
10654381 |
T |
|
| Q |
105 |
taaaatcccacatgaactcggtcgattgttccgattgcaggaactcttgattaataacaactccatgacaggggagattcctacaaacttgtcaagttgc |
204 |
Q |
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|| ||||| ||||||||||||| |||| ||||||||| ||||| | | || ||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
10654380 |
aaatatccctcatgaactcggtcagttgtcacgattgcagcaactcgttctctccaataactcaatgacaggggagattcctacaaacttgacaagttgc |
10654281 |
T |
|
| Q |
205 |
tctgatcttgaagtcttatacttacagagaaatcatttggttggtaaaataccaattggcatcagctctcttcataa |
281 |
Q |
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|||||||||||| ||||| |||| |||||||| || ||||||||||||||||| | || |||||||||||||| |
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| T |
10654280 |
tctgatcttgaatacttattcttatctggaaatcatctgattggtaaaataccaattcgaattagctctcttcataa |
10654204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 10562991 - 10563068
Alignment:
| Q |
38 |
tatctccccatgttggcaatctctcatttttgataagtctcaaccttgcaaacaatagtttctttggtaaaatcccac |
115 |
Q |
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|||||||| |||||||||||||| | |||||||||| |||| |||||| |||||||||||| | ||| ||||||||| |
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| T |
10562991 |
tatctccctatgttggcaatctcacctttttgataaatctcgaccttggaaacaatagtttttctggagaaatcccac |
10563068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 10719143 - 10719062
Alignment:
| Q |
38 |
tatctccccatgttggcaatctctcatttttgataagtctcaaccttgcaaacaatagtttctttggtaaaatcccacatga |
119 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| ||||| ||| |||||| || |||||||| |||| |||||||| |
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| T |
10719143 |
tatctccccatgttggcaatctctcctttttgataaacctcaatcttataaacaacagcttctttggagaaattccacatga |
10719062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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