View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3469_high_3 (Length: 298)
Name: NF3469_high_3
Description: NF3469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3469_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 4971572 - 4971835
Alignment:
| Q |
18 |
actactaccatttatgtcaataaataaactgagttagtaaaaaacattaatgagggttacttgttttaattccctatattttaccatcttttttatttga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4971572 |
actactaccatttatgtcaataaataaactgagttagtaaaaaacattaatgagggttacttgttttaattccctatattttaccatcttttttatttga |
4971671 |
T |
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| Q |
118 |
aattttgtttctttgagacagtgtgctatgcaataataacttttctggtgacattcctaaagaacttggagatctagctgagctagagttattggattta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4971672 |
aattttgtttctttgagacagtgtgctatgcaataataacttttctggtgacattcctaaagaacttggagatctagctgagctagagttattggattta |
4971771 |
T |
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| Q |
218 |
agggaaacgaatttgtcaggaagcatcccaactgagcttagtagaaaattatcactaaaacact |
281 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4971772 |
agggaaactaatttgtcaggaagcatcccaactgagcttagtagaaaattatcactaaaacact |
4971835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 4989481 - 4989743
Alignment:
| Q |
18 |
actactaccatttatgtcaataaataaactgagttagtaaaaaacattaatgagggttacttgttttaattccctatattttaccatcttttttatttga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4989481 |
actactaccatttatgtcaataaataaactgagttagtaaaa-acattaatgagggttacttgttttaattccctatattttaccatcttttttatttga |
4989579 |
T |
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| Q |
118 |
aattttgtttctttgagacagtgtgctatgcaataataacttttctggtgacattcctaaagaacttggagatctagctgagctagagttattggattta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4989580 |
aattttgtttctttgagacagtgtgctatgcaataataacttttctggtgacattcctaaagaacttggagatctagctgagctagagttattggattta |
4989679 |
T |
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| Q |
218 |
agggaaacgaatttgtcaggaagcatcccaactgagcttagtagaaaattatcactaaaacact |
281 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4989680 |
agggaaactaatttgtcaggaagcatcccaactgagcttagtagaaaattatcactaaaacact |
4989743 |
T |
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