View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3469_low_2 (Length: 338)

Name: NF3469_low_2
Description: NF3469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3469_low_2
NF3469_low_2
[»] chr6 (5 HSPs)
chr6 (1-330)||(787126-787455)
chr6 (26-190)||(9664639-9664803)
chr6 (19-189)||(3074909-3075082)
chr6 (19-142)||(21146819-21146941)
chr6 (7-43)||(8655815-8655851)
[»] chr4 (3 HSPs)
chr4 (18-189)||(55849418-55849590)
chr4 (5-164)||(55851978-55852150)
chr4 (191-239)||(33722080-33722128)
[»] chr1 (4 HSPs)
chr1 (43-189)||(20225515-20225661)
chr1 (7-139)||(20226808-20226942)
chr1 (123-188)||(20226953-20227018)
chr1 (3-40)||(29849971-29850008)
[»] chr3 (9 HSPs)
chr3 (6-189)||(20868675-20868860)
chr3 (19-156)||(27462140-27462277)
chr3 (19-189)||(24595209-24595375)
chr3 (19-189)||(20871313-20871490)
chr3 (68-189)||(51308791-51308912)
chr3 (6-189)||(51306330-51306512)
chr3 (114-189)||(35610797-35610872)
chr3 (19-73)||(27462290-27462344)
chr3 (3-32)||(52737813-52737842)
[»] chr8 (11 HSPs)
chr8 (6-161)||(35416076-35416231)
chr8 (25-194)||(12062760-12062931)
chr8 (25-189)||(369263-369425)
chr8 (19-158)||(31909100-31909236)
chr8 (6-109)||(3788487-3788591)
chr8 (118-189)||(4676130-4676201)
chr8 (118-189)||(4678075-4678146)
chr8 (45-168)||(3785816-3785937)
chr8 (7-98)||(19472471-19472563)
chr8 (7-98)||(19543396-19543488)
chr8 (7-98)||(19589208-19589300)
[»] chr2 (1 HSPs)
chr2 (19-189)||(26608008-26608177)
[»] chr5 (3 HSPs)
chr5 (48-189)||(27172855-27172995)
chr5 (118-189)||(39040636-39040707)
chr5 (7-40)||(26873149-26873182)
[»] chr7 (2 HSPs)
chr7 (25-168)||(2577001-2577142)
chr7 (7-40)||(41830317-41830350)


Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 787455 - 787126
Alignment:
Q  1 atatttgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  787455 atatttgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaagtttggaaaactattgtattgatgatacttgaaatgatacaaga 787356  T
Q  101 atgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaatatttactgtttc 200  Q
    |||||||||||| ||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787355 atgagaaagatcggtacaaatgagtcaatcatatgacttatatagtaactaaactagtgtcctaactacctatatcattattcttaatatttactgtttc 787256  T
Q  201 aattaatattccactttctaagatgttattgtgtttcatttcataaatttattggtagtttattacattgttgtttagttcttccagctttttcttcctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787255 aattaatattccactttctaagatgttattgtgtttcatttcataaatttattggtagtttattacattgttgtttagttcttccagctttttcttcctt 787156  T
Q  301 ttctcagaataggcaaaactcattgttcat 330  Q
    ||||||||||||||||||||||||||||||    
T  787155 ttctcagaataggcaaaactcattgttcat 787126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 9664639 - 9664803
Alignment:
Q  26 aaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagt 125  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| ||||||  ||||||||||||    
T  9664639 aaacatggcatccatggatatagagagaaaagcttgaaaaactattgtattgattatagttgaaatgatacaagaatgaaaaagataggtacaaatgagt 9664738  T
Q  126 caaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaatat 190  Q
    ||||||||| |||||||||||||||||||||||||||||| || ||||||||| |||||||||||    
T  9664739 caaccatgtgacttatatagtaactaaactagtgtcctaattaactatatcatcattcttaatat 9664803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 3075082 - 3074909
Alignment:
Q  19 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtatt-gatgatacttgaaatgatacaagaatgagaaagatcagtac 117  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||  ||||||   |||    
T  3075082 tgttagaaaacatggcatccatggatatagagagaaaagcttggaaaactattgtatttgatgatagttgaaatgatataagaatggaaaagatagatac 3074983  T
Q  118 aaatgagtcaaccatgtaacttatata--gtaactaaactagtgtcctaactacctatatcattattcttaata 189  Q
    ||||||| ||||||||| | |||||||  |||||||||||||||||||||||| ||||||||||||||||||||    
T  3074982 aaatgagacaaccatgtgatttatatatagtaactaaactagtgtcctaactaactatatcattattcttaata 3074909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 21146819 - 21146941
Alignment:
Q  19 tgttaggaaacatgtcatccatagatatagagagaaaag-cttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtac 117  Q
    ||||| ||||||||||||||||  | ||||||||||||  ||| ||||| |||||||||||  ||| |||||||||||||||||||| |||||   ||||    
T  21146819 tgttaagaaacatgtcatccatgaaaatagagagaaaaaacttagaaaattattgtattgaaaatagttgaaatgatacaagaatga-aaagagaggtac 21146917  T
Q  118 aaatgagtcaaccatgtaacttata 142  Q
    ||||||||||| ||||| |||||||    
T  21146918 aaatgagtcaa-catgtgacttata 21146941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 8655815 - 8655851
Alignment:
Q  7 gctctgataccatgttaggaaacatgtcatccataga 43  Q
    |||||||||||||||||||||||||| ||||||||||    
T  8655815 gctctgataccatgttaggaaacatggcatccataga 8655851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 55849418 - 55849590
Alignment:
Q  18 atgttaggaaacatgtcatccatagatatagagagaaaagcttgg-aaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagta 116  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||  ||||||  |||    
T  55849418 atgttaggaaacatggcatccatggatatagagagaaaagcttgggaaaactattgtattgatgatagttgaaatgatacaagaatggaaaagataggta 55849517  T
Q  117 caaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 189  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  55849518 caaatgagtcaaccatgtgacttatatagtaactgaactagtgtcctaactaactatatcattattcttaata 55849590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 164
Target Start/End: Original strand, 55851978 - 55852150
Alignment:
Q  5 ttgctctgataccatgttaggaaacatgtcatccatagatatagagaga----aaagcttggaaaa---------ctattgtattgatgatacttgaaat 91  Q
    |||||||||||| ||||||||||||||| ||||||| ||||||||||||    |||||||||||||         ||||||||||||||||| |||||||    
T  55851978 ttgctctgatacgatgttaggaaacatggcatccatggatatagagagagagaaaagcttggaaaaactattgtactattgtattgatgatagttgaaat 55852077  T
Q  92 gatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtccta 164  Q
    ||||||||||||  |||||| | |||||||||||||||||||| | ||||||||||||||| |||||||||||    
T  55852078 gatacaagaatgtaaaagataactacaaatgagtcaaccatgttagttatatagtaactaatctagtgtccta 55852150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 33722128 - 33722080
Alignment:
Q  191 ttactgtttcaattaatattccactttctaagatgttattgtgtttcat 239  Q
    |||||||||||||| |||||||||||| |||| ||||| ||||||||||    
T  33722128 ttactgtttcaattgatattccactttgtaagctgttagtgtgtttcat 33722080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 43 - 189
Target Start/End: Original strand, 20225515 - 20225661
Alignment:
Q  43 atatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttata 142  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||  ||||||  ||||||| ||||||||||||| |||||||    
T  20225515 atatagagagaaaagcttgcaaaactattgtattgatgataattgaaatgatacaagaatggaaaagataggtacaaaagagtcaaccatgtgacttata 20225614  T
Q  143 tagtaactaaactagtgtcctaactacctatatcattattcttaata 189  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  20225615 tagtaactaaactagtgtcctaactaactatatcattattcttaata 20225661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 20226808 - 20226942
Alignment:
Q  7 gctctgataccatgttaggaaacatgtcatccatagatatagag--agaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatga 104  Q
    |||||||||||||||||||||||| | ||| ||| |||||||||  ||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||    
T  20226808 gctctgataccatgttaggaaacacggcattcatggatatagagagagaaaagtttgaaaaactattgtattgatgataattgaaatgatacaagaatga 20226907  T
Q  105 gaaagatcagtacaaatgagtcaaccatgtaactt 139  Q
     ||||||  ||||||| ||||||||||||||||||    
T  20226908 aaaagataggtacaaaagagtcaaccatgtaactt 20226942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 20226953 - 20227018
Alignment:
Q  123 agtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaat 188  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  20226953 agtcaaccatatgacttatatagtaactaaactagtgtcctagctaactatatcattattcttaat 20227018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 29849971 - 29850008
Alignment:
Q  3 atttgctctgataccatgttaggaaacatgtcatccat 40  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  29849971 atttgctctgataccatgttatgaaacatggcatccat 29850008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 20868860 - 20868675
Alignment:
Q  6 tgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaa-atgatacaagaatga 104  Q
    ||||||||||||||||| ||||||||| |||||||  | | |||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||    
T  20868860 tgctctgataccatgttgggaaacatggcatccatgaaaagagagagaaaagcttagaaaactattgtattgatgatagttgaacataatacaagaatga 20868761  T
Q  105 gaaagatcagtacaaatgagtcaaccatgtaacttatatagtaact-aaactagtgtcctaactacctatatcattattcttaata 189  Q
     ||||||  |||||||| |||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||    
T  20868760 aaaagataggtacaaataagtcaaccatgtgacttatatagtaactaaaactagtatcctaactaactatatcattattcttaata 20868675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 27462277 - 27462140
Alignment:
Q  19 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtaca 118  Q
    |||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||  |||||    
T  27462277 tgttagtaaacatggcatccatggatatagagagaaaagcttggaaaactattgtattgattatagttgaaatgatacaagaatgaaaaagataggtaca 27462178  T
Q  119 aatgagtcaaccatgtaacttatatagtaactaaacta 156  Q
    |||||||||||||| | |||||||||||||||||||||    
T  27462177 aatgagtcaaccatatgacttatatagtaactaaacta 27462140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 24595375 - 24595209
Alignment:
Q  19 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaa-tgatacaagaatgagaaagatcagtac 117  Q
    ||||||||||||   |||||||  | |||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||| |||||| |||||    
T  24595375 tgttaggaaacacaacatccatgaagatagagagaaaagcttagaaa-ctattgtattgatgatagttgaaaatgatacaagaatgaaaaagattagtac 24595277  T
Q  118 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 189  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  24595276 aaatgagtcaaccatgtgacttatatagtaactaaactagtgtcctaa----ctatatcattattcttaata 24595209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 20871490 - 20871313
Alignment:
Q  19 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattg-----atgatacttgaaa-tgatacaagaatgagaaagatc 112  Q
    |||| ||||||||| |||||||  | | |||||||||||||| ||||||||||||||||     |||||| |||||| | |||||||||||| ||||||     
T  20871490 tgttgggaaacatgacatccatgaaaagagagagaaaagcttagaaaactattgtattgtattgatgatagttgaaaataatacaagaatgaaaaagata 20871391  T
Q  113 agtacaaatgagtcaaccatgtaacttatatagtaact-aaactagtgtcctaactacctatatcattattcttaata 189  Q
     ||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||| ||||||||||    
T  20871390 ggtacaaatgagtcaaccatgtgacttatatagtaactaaaactagtatcctaactaactatatcatcattcttaata 20871313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 51308912 - 51308791
Alignment:
Q  68 tattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaact 167  Q
    |||||||||||| ||| |||||||||||||||||| | | |||| |||||||||||||||||||||| |||||||||||||||| ||||| ||||||| |    
T  51308912 tattgtattgataatagttgaaatgatacaagaataaaagagattagtacaaatgagtcaaccatgtgacttatatagtaactacactagcgtcctaatt 51308813  T
Q  168 acctatatcattattcttaata 189  Q
    | ||||||||||||||||||||    
T  51308812 aactatatcattattcttaata 51308791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 51306512 - 51306330
Alignment:
Q  6 tgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaa-gcttggaaaactattgtattgatgatacttgaaatgatacaagaatga 104  Q
    |||||||||||||||||  |||||||| |||||||  | |||||||||||| |||| ||||  |||||||||||| ||| || ||||||||||| ||| |    
T  51306512 tgctctgataccatgttgagaaacatgacatccatgaaaatagagagaaaaagcttagaaat-tattgtattgataatagttaaaatgatacaaaaataa 51306414  T
Q  105 gaaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 189  Q
     | |||| |||| || |||||||||||| ||| |||||||||||||| ||||||||||||| || ||||||||||||||||||||    
T  51306413 aagagattagtataa-tgagtcaaccatataagttatatagtaactacactagtgtcctaattaactatatcattattcttaata 51306330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 35610872 - 35610797
Alignment:
Q  114 gtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 189  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||  |||||||| |||||| |||||||||||||    
T  35610872 gtacaaatgagtcaaccttgtgacttatatagtaactaaactagtaccctaactaactatattattattcttaata 35610797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 27462344 - 27462290
Alignment:
Q  19 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgt 73  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  27462344 tgttagtaaacatggcatccatggatatagagagaaaagcttggaaaactattgt 27462290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 52737813 - 52737842
Alignment:
Q  3 atttgctctgataccatgttaggaaacatg 32  Q
    ||||||||||||||||||||||||||||||    
T  52737813 atttgctctgataccatgttaggaaacatg 52737842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 6 - 161
Target Start/End: Original strand, 35416076 - 35416231
Alignment:
Q  6 tgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgag 105  Q
    |||||||||||||||||| |||||||| |||||||| | ||||||||||||||||| |||||||||||||| ||| || |||||||||||||| |||||     
T  35416076 tgctctgataccatgttaagaaacatggcatccataaaaatagagagaaaagcttgaaaaactattgtattaatggtagttgaaatgatacaataatgaa 35416175  T
Q  106 aaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtc 161  Q
     ||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  35416176 gaagataagtacaaatgagtcaaccatgtgacttatatagtcactaaactagtgtc 35416231  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 12062931 - 12062760
Alignment:
Q  25 gaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaa-tgatacaagaatgagaaagatcagtacaaatga 123  Q
    |||||||| |||||||  | |||||||||||||||| |||||||||| | ||||||||  |||||| | |||||||||||| | |  |  ||||||||||    
T  12062931 gaaacatggcatccatgaaaatagagagaaaagcttagaaaactattctcttgatgatggttgaaaataatacaagaatgaaagatgtgggtacaaatga 12062832  T
Q  124 gtcaaccatgtaacttatatagtaact-aaactagtgtcctaactacctatatcattattcttaatatttac 194  Q
    ||||||||||| ||||||||||||||| |||||||| || |||||| |||||||||||||||||||| ||||    
T  12062831 gtcaaccatgtgacttatatagtaactaaaactagtatcttaactaactatatcattattcttaatagttac 12062760  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 369425 - 369263
Alignment:
Q  25 gaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgag 124  Q
    |||||||| |||||||  | ||| |||||||| |||  | ||||||||||||||||||| |||||| ||||||| ||| | | ||||| |||||||| ||    
T  369425 gaaacatgacatccatgaaaataaagagaaaaactt--acaactattgtattgatgatagttgaaaagatacaaaaataaaagagatcggtacaaattag 369328  T
Q  125 tcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 189  Q
     ||||||| | |||||| |||||||||||||| | | ||||||| |||||| |||||||||||||    
T  369327 ccaaccatatgacttatttagtaactaaactactattctaactaactatattattattcttaata 369263  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 31909100 - 31909236
Alignment:
Q  19 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtaca 118  Q
    |||||||||||||| |||||||  | ||||||||||||||||  ||| ||||||||||||||||| |||||| ||||||| ||||| | |||   |||||    
T  31909100 tgttaggaaacatg-catccatgaaaatagagagaaaagcttacaaagctattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtaca 31909197  T
Q  119 aatgagtcaaccatgtaacttatatagtaactaaactagt 158  Q
    |||||||||| | ||| ||||||||||| |||||||||||    
T  31909198 aatgagtcaa-cttgtgacttatatagtgactaaactagt 31909236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 3788487 - 3788591
Alignment:
Q  6 tgctctgataccatgttaggaaacatgtcatccatagatatagagagaa-aagcttggaaaactattgtattgatgatacttgaaatgatacaagaatga 104  Q
    |||||||||||||||||  |||||||| |||||||  | |||||||||| ||| || ||||| |||||||||||| ||| ||||||||||||||||||||    
T  3788487 tgctctgataccatgttgagaaacatggcatccatgaaaatagagagaagaagtttagaaaattattgtattgataatagttgaaatgatacaagaatga 3788586  T
Q  105 gaaag 109  Q
     ||||    
T  3788587 aaaag 3788591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 4676201 - 4676130
Alignment:
Q  118 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 189  Q
    ||||||||||||| ||| |||||||||||||||||||||||   ||||||| ||||||||||||||||||||    
T  4676201 aaatgagtcaaccctgtgacttatatagtaactaaactagtactctaactaactatatcattattcttaata 4676130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 4678146 - 4678075
Alignment:
Q  118 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 189  Q
    ||||||||||||| ||| |||||||||||||||||||||||   ||||||| ||||||||||||||||||||    
T  4678146 aaatgagtcaaccttgtgacttatatagtaactaaactagtactctaactaactatatcattattcttaata 4678075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 3785816 - 3785937
Alignment:
Q  45 atagagagaa-aagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatat 143  Q
    |||||||||| |||||| | ||| |||||||||||| ||| |||||||||||||||||| | |||| | | |||||||||||||| | ||| ||||||||    
T  3785816 atagagagaagaagcttaggaaattattgtattgataatagttgaaatgatacaagaataaaaaag-tga-tacaaatgagtcaa-cttgtgacttatat 3785912  T
Q  144 agtaactaaactagtgtcctaacta 168  Q
    ||| |||| | ||||  ||||||||    
T  3785913 agtgactatagtagtaccctaacta 3785937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 19472471 - 19472563
Alignment:
Q  7 gctctgataccatgttaggaaacatgtcatccatagatatagagag-aaaagcttggaaaactattgtattgatgatacttgaaatgatacaa 98  Q
    ||||||||||||||||  |||||||| |||||||  | |||||||| ||||||||   ||| |||| ||||||  ||| ||||||||||||||    
T  19472471 gctctgataccatgttgagaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttgaaatgatacaa 19472563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 19543396 - 19543488
Alignment:
Q  7 gctctgataccatgttaggaaacatgtcatccatagatatagagag-aaaagcttggaaaactattgtattgatgatacttgaaatgatacaa 98  Q
    ||||||||||||||||  |||||||| |||||||  | |||||||| ||||||||   ||| |||| ||||||  ||| ||||||||||||||    
T  19543396 gctctgataccatgttgagaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttgaaatgatacaa 19543488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 19589300 - 19589208
Alignment:
Q  7 gctctgataccatgttaggaaacatgtcatccatagatatagagag-aaaagcttggaaaactattgtattgatgatacttgaaatgatacaa 98  Q
    ||||||||||||||||  |||||||| |||||||  | |||||||| ||||||||   ||| |||| ||||||  ||| ||||||||||||||    
T  19589300 gctctgataccatgttgagaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttgaaatgatacaa 19589208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 26608008 - 26608177
Alignment:
Q  19 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaa-tgatacaagaatgagaaagatcagtac 117  Q
    ||||| |||||||| |||||||  | |||||||||||||||| ||||  |||||||||||||||| |||||| |||||||||||||| ||||||  ||||    
T  26608008 tgttaagaaacatgacatccatgaaaatagagagaaaagcttagaaa--tattgtattgatgatagttgaaaatgatacaagaatgaaaaagataggtac 26608105  T
Q  118 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 189  Q
    | ||||||||||| ||| ||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  26608106 agatgagtcaaccttgtgacttatatagtaactgaactagtatcctaactaactatatcattattcttaata 26608177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 27172855 - 27172995
Alignment:
Q  48 gagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagta 147  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||  ||||||   ||||||||||||| | |  | ||||||||||||    
T  27172855 gagagaaaagcttggaaaactattctattgatgatagttgaaatgatacaagaatggaaaagatagttacaaatgagtcacctaa-tgacttatatagta 27172953  T
Q  148 actaaactagtgtcctaactacctatatcattattcttaata 189  Q
    ||||||||||| ||||||||  ||||||||||||||||||||    
T  27172954 actaaactagtatcctaacttactatatcattattcttaata 27172995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 39040636 - 39040707
Alignment:
Q  118 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 189  Q
    ||||||||||||| ||| |||||||||||||||||||||||   ||||||| ||||||||||||||||||||    
T  39040636 aaatgagtcaaccttgtgacttatatagtaactaaactagtactctaactaactatatcattattcttaata 39040707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 26873149 - 26873182
Alignment:
Q  7 gctctgataccatgttaggaaacatgtcatccat 40  Q
    |||||||||||||||||||||||||| |||||||    
T  26873149 gctctgataccatgttaggaaacatggcatccat 26873182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 2577142 - 2577001
Alignment:
Q  25 gaaacatgtcatccatagatatagagagaa-aagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatga 123  Q
    |||||||| |||||||  | |||||||||| |||||| ||||| |||||||||||| ||| |||||||||||||||||||| |||| | | |||||||||    
T  2577142 gaaacatggcatccatgaaaatagagagaagaagcttagaaaattattgtattgataatagttgaaatgatacaagaatgaaaaag-tga-tacaaatga 2577045  T
Q  124 gtcaaccatgtaacttatatagtaactaaactagtgtcctaacta 168  Q
    ||||| | ||| ||||||||||| |||| ||||||  ||||||||    
T  2577044 gtcaa-cttgtgacttatatagtgactatactagtaccctaacta 2577001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 41830350 - 41830317
Alignment:
Q  7 gctctgataccatgttaggaaacatgtcatccat 40  Q
    ||||| ||||||||||||||||||||||||||||    
T  41830350 gctctaataccatgttaggaaacatgtcatccat 41830317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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