View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3470_high_12 (Length: 531)
Name: NF3470_high_12
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 34 - 516
Target Start/End: Complemental strand, 24761327 - 24760845
Alignment:
| Q |
34 |
tccattagactaattttccatatccaaaactaaaaccttttgaaagaatttagcatcccttaaaactattcacatttgatcactaaacacaaagaacacc |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
24761327 |
tccattagactaattttccatatccaaaactaaaaccttttgaaagaatttagcatcccttaaaactattcacatttgaccactaaacacaaagaacacc |
24761228 |
T |
|
| Q |
134 |
aactgagaaacacaaatgggattggaaacaaacataattagcaaataaactatactgattttttatgaataaattatcacgataagatgcacgaatttat |
233 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24761227 |
aactgagaaacacaaatgggatcggaaacaaacataattagcaaataaactatactgattttttatgaataaattatcacgataagatgcacgaatttat |
24761128 |
T |
|
| Q |
234 |
actttgagagataaaattaaacaatgattgatagtgctaatggcagaaacaggtaaactctaattgccttaacaaaccagaagtgacaaatagaagcagt |
333 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24761127 |
actttgagagataaaattaaacgatgattgatagtgctaatggcagaaacaggtaaactctaattgccttaacaaaccagaagtgacaaatagaagcagt |
24761028 |
T |
|
| Q |
334 |
gatcaatatggttaagctgaagtattaaaagaaggtattgatgtatgaactgtggcaaatgagaagtaagtgatctcagaatattatttgaccaatcaaa |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24761027 |
gatcaatatggttaagctgaagtattaaaagaagctattgatgtatgaactgtggcaaatgagaagtaagtgatctcagaatattatttgaccaatcaaa |
24760928 |
T |
|
| Q |
434 |
tgtgatccaaatgctaccaaattaaataatatgcatcccaacatacctatacacatatacacaattttagatttgaaagaaac |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24760927 |
tgtgatccaaatgctaccaaattaaataatatgcatcccaacatacctatacacatatacacaattttagatttgaaagaaac |
24760845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 34 - 218
Target Start/End: Complemental strand, 24761696 - 24761512
Alignment:
| Q |
34 |
tccattagactaattttccatatccaaaactaaaaccttttgaaagaatttagcatcccttaaaactattcacatttgatcactaaacacaaagaacacc |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
24761696 |
tccattagactaattttccatatccaaaactaaaaccttttgaaagaatttagcatcccttaaaactattcacacttgaccactaaacacaaagaacacc |
24761597 |
T |
|
| Q |
134 |
aactgagaaacacaaatgggattggaaacaaacataattagcaaataaactatactgattttttatgaataaattatcacgataa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
24761596 |
aactgagaaacacaaatgggattggaaacaaacataattagcaaataaactatactgattttttatgaataaattattacgataa |
24761512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 34 - 516
Target Start/End: Complemental strand, 52128762 - 52128280
Alignment:
| Q |
34 |
tccattagactaattttccatatccaaaactaaaaccttttgaaagaatttagcatcccttaaaactattcacatttgatcactaaacacaaagaacacc |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
52128762 |
tccattagactaattttccatatccaaaactaaaaccttttgaaagaatttagcatcccttaaaactattcacatttgaccactaaacacaaagaacacc |
52128663 |
T |
|
| Q |
134 |
aactgagaaacacaaatgggattggaaacaaacataattagcaaataaactatactgattttttatgaataaattatcacgataagatgcacgaatttat |
233 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52128662 |
aactgagaaacacaaatgggatcggaaacaaacataattagcaaataaactatactgattttttatgaataaattatcacgataagatgcacgaatttat |
52128563 |
T |
|
| Q |
234 |
actttgagagataaaattaaacaatgattgatagtgctaatggcagaaacaggtaaactctaattgccttaacaaaccagaagtgacaaatagaagcagt |
333 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52128562 |
actttgagagataaaattaaacgatgattgatagtgctaatggcagaaacaggtaaactctaattgccttaacaaaccagaagtgacaaatagaagcagt |
52128463 |
T |
|
| Q |
334 |
gatcaatatggttaagctgaagtattaaaagaaggtattgatgtatgaactgtggcaaatgagaagtaagtgatctcagaatattatttgaccaatcaaa |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52128462 |
gatcaatatggttaagctgaagtattaaaagaagctattgatgtatgaactgtggcaaatgagaagtaagtgatctcagaatattatttgaccaatcaaa |
52128363 |
T |
|
| Q |
434 |
tgtgatccaaatgctaccaaattaaataatatgcatcccaacatacctatacacatatacacaattttagatttgaaagaaac |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52128362 |
tgtgatccaaatgctaccaaattaaataatatgcatcccaacatacctatacacatatacacaattttagatttgaaagaaac |
52128280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 34 - 218
Target Start/End: Complemental strand, 52129131 - 52128947
Alignment:
| Q |
34 |
tccattagactaattttccatatccaaaactaaaaccttttgaaagaatttagcatcccttaaaactattcacatttgatcactaaacacaaagaacacc |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
52129131 |
tccattagactaattttccatatccaaaactaaaaccttttgaaagaatttagcatcccttaaaactattcacacttgaccactaaacacaaagaacacc |
52129032 |
T |
|
| Q |
134 |
aactgagaaacacaaatgggattggaaacaaacataattagcaaataaactatactgattttttatgaataaattatcacgataa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
52129031 |
aactgagaaacacaaatgggattggaaacaaacataattagcaaataaactatactgattttttatgaataaattattacgataa |
52128947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 273 - 516
Target Start/End: Original strand, 4160025 - 4160269
Alignment:
| Q |
273 |
atggcagaaacaggtaaactctaattgccttaacaaaccagaagtgacaaatagaagcagtgatcaatatggttaagctgaagtattaaaagaaggt-at |
371 |
Q |
| |
|
||||| |||||||||||||| ||||||| |||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| ||||||| | || |
|
|
| T |
4160025 |
atggcggaaacaggtaaactataattgctttaacaaaccagaagtagcaaatagaagcaatgatcaacatggttaagctgaagtatttaaagaagctcat |
4160124 |
T |
|
| Q |
372 |
tgatgtatgaactgtggcaaatgagaagtaagtgatctcagaatattatttgaccaatcaaatgtgatccaaatgctaccaaattaaataatatgcatcc |
471 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4160125 |
tgatgtatgaaatgtggcaaatgagaagcaagtgatctcagaatattatttgaccaatcaaatgtgatccaaatgctaccaaattaaatactatgcatcc |
4160224 |
T |
|
| Q |
472 |
caacatacctatacacatatacacaattttagatttgaaagaaac |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4160225 |
caacatacctatacacatatacacaattttagatttgaaagaaac |
4160269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 398 - 484
Target Start/End: Complemental strand, 1179369 - 1179283
Alignment:
| Q |
398 |
agtaagtgatctcagaatattatttgaccaatcaaatgtgatccaaatgctaccaaattaaataatatgcatcccaacatacctata |
484 |
Q |
| |
|
|||| ||| |||||||||||||||||||| || ||||||||||||||||| ||||| ||||| | ||||||||| ||||| |||| |
|
|
| T |
1179369 |
agtaggtgttctcagaatattatttgacccatggaatgtgatccaaatgctgccaaaataaattctgtgcatcccagcatacatata |
1179283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 5e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 309 - 516
Target Start/End: Complemental strand, 3004254 - 3004046
Alignment:
| Q |
309 |
accagaagtgacaaatagaagcagtgatcaatatggttaagctgaagtattaaaagaaggt-attgatgtatgaactgtggcaaatgagaagtaagtgat |
407 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3004254 |
accagaagtagcaaatagaagcagtgatcaatatgattaagctgaagtattaaaagaagctcattgatgtatgaactgtggcaaatgagaagtaggtgat |
3004155 |
T |
|
| Q |
408 |
ctcagaatattatttgaccaatcaaatgtgatccaaatgctaccaaattaaataatatgcatcccaacatacctatacacatatacacaattttagattt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| |||||||||||||||| |
|
|
| T |
3004154 |
ctcagaatattatttgaccaatcaaatgtgatccaaatgctaccaaattaaatactatgcatcccaacatatctttacacataaacacaattttagattt |
3004055 |
T |
|
| Q |
508 |
gaaagaaac |
516 |
Q |
| |
|
||||||||| |
|
|
| T |
3004054 |
gaaagaaac |
3004046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 3004309 - 3004262
Alignment:
| Q |
147 |
aaatgggattggaaacaaacataattagcaaataaactatactgattt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3004309 |
aaatgggattggaaacaaacataattagcaaataaactacactgattt |
3004262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 3004378 - 3004336
Alignment:
| Q |
109 |
ttgatcactaaacacaaagaacaccaactgagaaacacaaatg |
151 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
3004378 |
ttgaccactaaacacaaagaacgccaactgaaaaacacaaatg |
3004336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 309 - 516
Target Start/End: Complemental strand, 54654301 - 54654105
Alignment:
| Q |
309 |
accagaagtgacaaatagaagcagtgatcaatatggttaagctgaagtattaaaagaaggt-attgatgtatgaactgtggcaaatgagaagtaagtgat |
407 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54654301 |
accagaagtagcaaatagaagcagtgatcaatatggttaagctgaagtattaaaagaagctcattgatgtatgaactctggcaaatgagaagtaagtgat |
54654202 |
T |
|
| Q |
408 |
ctcagaatattatttgaccaatcaaatgtgatccaaatgctaccaaattaaataatatgcatcccaacatacctatacacatatacacaattttagattt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
54654201 |
ctcagaatattatttgaccaatcaaatgtgatcc----------aaattaaatactatgcatcccaacatacctttacac--atacacaattttagattt |
54654114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 54654356 - 54654309
Alignment:
| Q |
147 |
aaatgggattggaaacaaacataattagcaaataaactatactgattt |
194 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
54654356 |
aaatgggatttgaaacaaatataattagcaaataaactacactgattt |
54654309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 54654425 - 54654383
Alignment:
| Q |
109 |
ttgatcactaaacacaaagaacaccaactgagaaacacaaatg |
151 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
54654425 |
ttgaccactaaacacaaagaacgccaactgaaaaacacaaatg |
54654383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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