View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3470_high_15 (Length: 491)
Name: NF3470_high_15
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 31621425 - 31620971
Alignment:
| Q |
18 |
gattacacagactgcaacgaagcttttgaatgcggaagtagcagcatcacagacatcaagtatccattctggggaggaaacagagaagagagttgtggt- |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
31621425 |
gattacacagactgcaacgaagcttttgaatgcggaagtagcagcatcacaaacctcaagtatccattctggggaaataacagagaagagcgttgtggta |
31621326 |
T |
|
| Q |
117 |
--gtttctgatcctaatatggagcttacatgcgaagaaagtgttccaaagataaccatcaatgacgtcaaataccgtattcttgaatgggacaataaaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31621325 |
gtgtttctgatcctaatatggagcttacatgcgaagaaagtgttccaaagataaccatcaatgacgtcaaataccgtattcttgaatgggacaatacaac |
31621226 |
T |
|
| Q |
215 |
acagaaactcacagtcgctagagacgattactggggtggtatttgtactgtgagtgtgagtgtgagtgacaagcctaataacagcacatttgagagcgct |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31621225 |
acagaaactcacagtcgctagagacgattactggggtggtatttgtactgtgagtgtgagtgtgagtgacaagcctaataacagcacatttgagagcgct |
31621126 |
T |
|
| Q |
315 |
gatcagtttcaacgtgatagtggtgttttttctcaagtaaatctgttatataattgtgatacaact---atgggcgaggtttataatccctcctgtggag |
411 |
Q |
| |
|
|| |||||||||| | || || |||||| ||||||| ||||||||||||| ||||||||||||||| || | |||||||| | || ||| |||| |
|
|
| T |
31621125 |
gaccagtttcaaccttatggtagtgtttcttctcaactaaatctgttatacaattgtgatacaactgtattgaatgtggtttatagtgccaactgcggag |
31621026 |
T |
|
| Q |
412 |
gtaatattgaagttgtgtacaccttttcgaattctcgttcgttcttactcccatg |
466 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||| ||| |||| |||| |
|
|
| T |
31621025 |
gtaatattgaagttgtgtacaccctttcggatcctcgttcgctctcactcacatg |
31620971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 31636420 - 31635966
Alignment:
| Q |
18 |
gattacacagactgcaacgaagcttttgaatgcggaagtagcagcatcacagacatcaagtatccattctggggaggaaacagagaagagagttgtggt- |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
31636420 |
gattacacagactgcaacgaagcttttgaatgcggaagtagcagcatcacaaacctcaagtatccattctggggaaataacagagaagagcgttgtggta |
31636321 |
T |
|
| Q |
117 |
--gtttctgatcctaatatggagcttacatgcgaagaaagtgttccaaagataaccatcaatgacgtcaaataccgtattcttgaatgggacaataaaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31636320 |
gtgtttctgatcctaatatggagcttacatgcgaagaaagtgttccaaagataaccatcaatgacgtcaaataccgtattcttgaatgggacaatacaac |
31636221 |
T |
|
| Q |
215 |
acagaaactcacagtcgctagagacgattactggggtggtatttgtactgtgagtgtgagtgtgagtgacaagcctaataacagcacatttgagagcgct |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31636220 |
acagaaactcacagtcgctagagacgattactggggtggtatttgtactgtgagtgtgagtgtgagtgacaagcctaataacagcacatttgagagcgct |
31636121 |
T |
|
| Q |
315 |
gatcagtttcaacgtgatagtggtgttttttctcaagtaaatctgttatataattgtgatacaact---atgggcgaggtttataatccctcctgtggag |
411 |
Q |
| |
|
|| |||||||||| | || || |||||| ||||||| ||||||||||||| ||||||||||||||| || | |||||||| | || ||| |||| |
|
|
| T |
31636120 |
gaccagtttcaaccttatggtagtgtttcttctcaactaaatctgttatacaattgtgatacaactgtattgaatgtggtttatagtgccaactgcggag |
31636021 |
T |
|
| Q |
412 |
gtaatattgaagttgtgtacaccttttcgaattctcgttcgttcttactcccatg |
466 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||| ||| |||| |||| |
|
|
| T |
31636020 |
gtaatattgaagttgtgtacaccctttcggatcctcgttcgctctcactcacatg |
31635966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 57 - 378
Target Start/End: Complemental strand, 31616643 - 31616325
Alignment:
| Q |
57 |
agcagcatcacagacatcaagtatccattctggggaggaaacag---agaagagagttgtggtgtttct---gatcctaatatggagcttacatgcgaag |
150 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||| || | || | || ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31616643 |
agcagcatcacgaacatcaagtatccattctggggagaaaataggaaaaaatattgtggtggtgtttcttctgatcctaatatggagcttacatgcgaag |
31616544 |
T |
|
| Q |
151 |
aaagtgttccaaagataaccatcaatgacgtcaaataccgtattcttgaatgggacaataaaacacagaaactcacagtcgctagagacgattactgggg |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| ||| ||| | ||| || |||||||||||| |||| ||||||||||||||| | |
|
|
| T |
31616543 |
aaagtgttccaaagataaccatcaatgacgccaaataccgtattcatgattggaatgatataatacagaaactcacgatcgccagagacgattactggag |
31616444 |
T |
|
| Q |
251 |
tggtatttgtactgtgagtgtgagtgtgagtgacaagcctaataacagcacatttgagagcgctgatcagtttcaacgtgatagtggtgttttttctcaa |
350 |
Q |
| |
|
|||||||||| |||| | |||||||| || || || || ||||| || ||||| ||| || || ||||||||||||| ||| ||||| ||||||| |
|
|
| T |
31616443 |
tggtatttgtgctgtcaatgtgagtg-ga-----aatcccaagaacagaacttttgatagcact-at--gtttcaacgtgatggtgttgtttcttctcaa |
31616353 |
T |
|
| Q |
351 |
gtaaatctgttatataattgtgatacaa |
378 |
Q |
| |
|
||||| |||||||| ||||||||||||| |
|
|
| T |
31616352 |
gtaaacctgttatacaattgtgatacaa |
31616325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 31606751 - 31606494
Alignment:
| Q |
21 |
tacacagactgcaacgaagcttttgaatgcggaagtagcagcatcacagacatcaagtatccattctggggaggaaacagaga---agagagttgtggtg |
117 |
Q |
| |
|
|||||| |||||||| | |||||| | |||||||| ||||||| | |||||||||||||||||||||||| ||| ||||| | | || |||||| |
|
|
| T |
31606751 |
tacacaaactgcaacaatgcttttaactgcggaag---cagcatcgcgaacatcaagtatccattctggggagaaaatagagataaatattgtggtggtg |
31606655 |
T |
|
| Q |
118 |
tttct---gatcctaatatggagcttacatgcgaagaaagtgttccaaagataaccatcaatgacgtcaaataccgtattcttgaatgggacaataaaac |
214 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||| || ||| || |
|
|
| T |
31606654 |
tttcttccgatcctaatatggatcttacatgcgaagaaagtgttccaaagataaatatcaacgacgtcaaataccgcattcttgattggaacgatacaat |
31606555 |
T |
|
| Q |
215 |
acagaaactcacagtcgctagagacgattactggggtggtatttgtactgtgagtgtgagt |
275 |
Q |
| |
|
||| |||||||||||||| ||||| |||| |||| ||||||||||| |||||| ||||||| |
|
|
| T |
31606554 |
acaaaaactcacagtcgccagagaagattgctggagtggtatttgtgctgtgaatgtgagt |
31606494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 48 - 265
Target Start/End: Complemental strand, 31610554 - 31610334
Alignment:
| Q |
48 |
tgcggaagtagcagcatcacagacatcaagtatccattctggggaggaaacagagaagagagttgtggtgtttctg---atcctaatatggagcttacat |
144 |
Q |
| |
|
|||| ||||||||||||| || || |||||||||| | ||||||||||||||||||| || |||||||||||||| ||||||| |||||||| || |
|
|
| T |
31610554 |
tgcgaaagtagcagcatctcaaacctcaagtatccgtactggggaggaaacagagaaaagtattgtggtgtttctggtgatcctaagatggagctcgtat |
31610455 |
T |
|
| Q |
145 |
gcgaagaaagtgttccaaagataaccatcaatgacgtcaaataccgtattcttgaatgggacaataaaacacagaaactcacagtcgctagagacgatta |
244 |
Q |
| |
|
|||||| |||||| || |||||||| || ||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||| || ||||||||||| |
|
|
| T |
31610454 |
gcgaaggaagtgtccctaagataacaattaatttggtcaaataccgtattcttgaatgggacaatacaacacagagactcagagttgccagagacgatta |
31610355 |
T |
|
| Q |
245 |
ctggggtggtatttgtactgt |
265 |
Q |
| |
|
|||| ||||||||||| |||| |
|
|
| T |
31610354 |
ctggagtggtatttgtgctgt |
31610334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 248
Target Start/End: Complemental strand, 31597496 - 31597326
Alignment:
| Q |
78 |
tatccattctggggaggaaacagagaagagagttgtggtgtttctgatcctaatatggagcttacatgcgaagaaagtgttccaaagataaccatcaatg |
177 |
Q |
| |
|
|||||||||||||||| ||| |||| | | |||||||||||| |||||||||||| ||||||||||||||| || || || |||||||| |||||| |
|
|
| T |
31597496 |
tatccattctggggagaaaatagaggaaattattgtggtgtttccgatcctaatatgaagcttacatgcgaaggaaaagtcccgaagataacgatcaatt |
31597397 |
T |
|
| Q |
178 |
acgtcaaataccgtattcttgaatgggacaataaaacacagaaactcacagtcgctagagacgattactgg |
248 |
Q |
| |
|
||| ||||| ||||||||||||||| ||||| ||||| || ||| | ||| || ||||| ||||||||| |
|
|
| T |
31597396 |
tcgtgaaatatcgtattcttgaatggaacaatgcaacactgagacttagagttgcaagagatgattactgg |
31597326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University