View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3470_high_17 (Length: 468)

Name: NF3470_high_17
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3470_high_17
NF3470_high_17
[»] chr8 (34 HSPs)
chr8 (240-460)||(27243446-27243670)
chr8 (240-460)||(27255021-27255245)
chr8 (240-326)||(42094706-42094792)
chr8 (241-317)||(22632323-22632399)
chr8 (240-320)||(42094009-42094089)
chr8 (240-287)||(22632969-22633016)
chr8 (240-292)||(5434032-5434084)
chr8 (240-316)||(26847097-26847173)
chr8 (240-287)||(16911047-16911094)
chr8 (238-288)||(26847721-26847771)
chr8 (239-288)||(4402287-4402336)
chr8 (240-317)||(35399914-35399991)
chr8 (235-290)||(36403023-36403078)
chr8 (240-278)||(9277792-9277830)
chr8 (235-291)||(36402196-36402252)
chr8 (240-315)||(12644030-12644105)
chr8 (245-288)||(36180692-36180735)
chr8 (240-287)||(42663998-42664045)
chr8 (240-291)||(44376643-44376694)
chr8 (240-279)||(44656326-44656365)
chr8 (240-282)||(202577-202619)
chr8 (240-282)||(317414-317456)
chr8 (237-287)||(9277193-9277243)
chr8 (239-285)||(35399177-35399223)
chr8 (240-281)||(54753-54794)
chr8 (235-288)||(9929195-9929248)
chr8 (239-288)||(31713868-31713917)
chr8 (239-288)||(36182121-36182170)
chr8 (240-292)||(5434765-5434817)
chr8 (252-284)||(16718381-16718413)
chr8 (240-288)||(19220913-19220961)
chr8 (235-287)||(31713391-31713443)
chr8 (240-276)||(35125378-35125414)
chr8 (240-284)||(42663277-42663321)
[»] chr4 (41 HSPs)
chr4 (19-179)||(7389157-7389317)
chr4 (240-460)||(1053806-1054030)
chr4 (240-419)||(13924793-13924979)
chr4 (240-326)||(13925611-13925697)
chr4 (244-353)||(18363588-18363697)
chr4 (244-353)||(36599231-36599340)
chr4 (240-288)||(14527576-14527624)
chr4 (240-287)||(24666129-24666176)
chr4 (239-287)||(25725809-25725857)
chr4 (240-284)||(34450815-34450859)
chr4 (242-330)||(53778373-53778461)
chr4 (240-282)||(34451443-34451485)
chr4 (240-353)||(24666787-24666900)
chr4 (240-353)||(34941502-34941615)
chr4 (240-288)||(6056999-6057047)
chr4 (240-288)||(26354232-26354280)
chr4 (239-287)||(35605990-35606038)
chr4 (240-288)||(51387125-51387173)
chr4 (241-288)||(20143280-20143327)
chr4 (242-288)||(38519187-38519233)
chr4 (196-237)||(7389336-7389377)
chr4 (240-289)||(51386456-51386505)
chr4 (239-284)||(52129420-52129465)
chr4 (240-284)||(42792775-42792819)
chr4 (240-284)||(47157383-47157427)
chr4 (242-330)||(47764059-47764147)
chr4 (240-279)||(6258155-6258194)
chr4 (240-271)||(18362935-18362966)
chr4 (240-279)||(21527034-21527073)
chr4 (240-287)||(25055109-25055156)
chr4 (240-287)||(36248399-36248446)
chr4 (240-271)||(36599960-36599991)
chr4 (245-284)||(47156638-47156677)
chr4 (241-292)||(53777822-53777873)
chr4 (240-290)||(21281159-21281209)
chr4 (244-282)||(26393404-26393442)
chr4 (238-288)||(35606641-35606691)
chr4 (240-281)||(21837389-21837430)
chr4 (235-291)||(21280030-21280086)
chr4 (240-288)||(56226462-56226510)
chr4 (240-288)||(56227055-56227103)
[»] chr1 (24 HSPs)
chr1 (241-419)||(4059912-4060097)
chr1 (235-353)||(26240806-26240924)
chr1 (252-322)||(4058886-4058956)
chr1 (240-288)||(12449312-12449360)
chr1 (240-287)||(26240114-26240161)
chr1 (240-282)||(16449555-16449597)
chr1 (240-282)||(16459129-16459171)
chr1 (240-284)||(33357733-33357777)
chr1 (240-288)||(50657141-50657189)
chr1 (240-287)||(24847783-24847830)
chr1 (240-287)||(24848427-24848474)
chr1 (239-290)||(31116682-31116733)
chr1 (245-288)||(34026970-34027013)
chr1 (240-287)||(43552993-43553040)
chr1 (240-290)||(31109239-31109289)
chr1 (244-281)||(14166914-14166951)
chr1 (238-287)||(51547590-51547639)
chr1 (243-291)||(5491333-5491381)
chr1 (240-284)||(27746162-27746206)
chr1 (241-288)||(6942191-6942238)
chr1 (240-279)||(27745556-27745595)
chr1 (235-282)||(46253621-46253668)
chr1 (240-290)||(13416333-13416383)
chr1 (244-281)||(2260857-2260894)
[»] chr3 (40 HSPs)
chr3 (240-381)||(47571846-47571987)
chr3 (239-320)||(47571195-47571276)
chr3 (236-288)||(15287563-15287615)
chr3 (240-282)||(49349676-49349718)
chr3 (240-318)||(53242666-53242744)
chr3 (239-287)||(24511993-24512041)
chr3 (240-287)||(20807937-20807984)
chr3 (241-288)||(54308454-54308501)
chr3 (241-287)||(9830573-9830619)
chr3 (240-282)||(53344747-53344789)
chr3 (240-288)||(3584005-3584053)
chr3 (240-288)||(24515013-24515061)
chr3 (240-284)||(47809117-47809161)
chr3 (240-284)||(53344017-53344061)
chr3 (240-287)||(4706957-4707004)
chr3 (240-291)||(14746041-14746092)
chr3 (240-287)||(20808608-20808655)
chr3 (240-291)||(41419616-41419667)
chr3 (235-290)||(43454159-43454214)
chr3 (240-279)||(47808362-47808401)
chr3 (240-287)||(49350271-49350318)
chr3 (240-287)||(52924434-52924481)
chr3 (236-282)||(33761966-33762012)
chr3 (240-290)||(43453439-43453489)
chr3 (240-288)||(9831262-9831310)
chr3 (240-288)||(18745370-18745418)
chr3 (240-291)||(14746899-14746949)
chr3 (240-290)||(16076210-16076260)
chr3 (245-283)||(29516554-29516592)
chr3 (240-282)||(46883764-46883806)
chr3 (246-288)||(51920720-51920762)
chr3 (240-282)||(53343862-53343904)
chr3 (244-293)||(43479506-43479555)
chr3 (242-287)||(47677523-47677568)
chr3 (242-275)||(48626127-48626160)
chr3 (240-288)||(53503-53551)
chr3 (240-288)||(55327-55375)
chr3 (242-282)||(2226706-2226746)
chr3 (235-287)||(33762689-33762741)
chr3 (242-282)||(38557237-38557277)
[»] chr5 (28 HSPs)
chr5 (240-381)||(33087373-33087514)
chr5 (235-330)||(35524835-35524930)
chr5 (240-320)||(33086729-33086809)
chr5 (235-318)||(24565568-24565651)
chr5 (235-318)||(24606604-24606687)
chr5 (240-288)||(39937906-39937954)
chr5 (239-330)||(4095111-4095201)
chr5 (240-291)||(35524122-35524173)
chr5 (240-282)||(2029053-2029095)
chr5 (239-281)||(20476123-20476165)
chr5 (240-289)||(23253485-23253534)
chr5 (240-285)||(40372163-40372208)
chr5 (240-288)||(16195129-16195177)
chr5 (239-287)||(38129125-38129173)
chr5 (240-288)||(39466885-39466933)
chr5 (240-279)||(27345928-27345967)
chr5 (241-287)||(15561411-15561457)
chr5 (240-285)||(4082993-4083038)
chr5 (239-287)||(29595595-29595643)
chr5 (239-287)||(38129844-38129892)
chr5 (248-287)||(4083669-4083708)
chr5 (240-278)||(39936255-39936293)
chr5 (242-291)||(4095871-4095920)
chr5 (240-281)||(23257319-23257360)
chr5 (235-284)||(39467643-39467692)
chr5 (240-288)||(2028337-2028385)
chr5 (241-281)||(8743108-8743148)
chr5 (240-288)||(29594906-29594954)
[»] scaffold0219 (1 HSPs)
scaffold0219 (242-370)||(8349-8475)
[»] chr7 (39 HSPs)
chr7 (237-292)||(41965773-41965828)
chr7 (240-287)||(28007157-28007204)
chr7 (240-330)||(41617192-41617282)
chr7 (242-288)||(44876934-44876980)
chr7 (235-291)||(767963-768019)
chr7 (240-287)||(41358972-41359019)
chr7 (240-290)||(24874576-24874626)
chr7 (240-318)||(36611464-36611542)
chr7 (239-288)||(3314954-3315003)
chr7 (240-285)||(46491691-46491736)
chr7 (240-284)||(767136-767180)
chr7 (240-288)||(35892303-35892351)
chr7 (240-292)||(41965112-41965164)
chr7 (240-284)||(42818557-42818601)
chr7 (240-287)||(3849597-3849644)
chr7 (240-287)||(28007814-28007861)
chr7 (245-288)||(36611556-36611599)
chr7 (240-287)||(41358311-41358358)
chr7 (240-287)||(44120358-44120405)
chr7 (238-288)||(3850366-3850416)
chr7 (240-282)||(17114145-17114187)
chr7 (238-288)||(30581266-30581316)
chr7 (237-291)||(33261410-33261464)
chr7 (237-287)||(34807925-34807975)
chr7 (237-291)||(41617978-41618032)
chr7 (240-281)||(3315470-3315511)
chr7 (241-330)||(38815994-38816083)
chr7 (245-288)||(37783481-37783524)
chr7 (244-287)||(40427583-40427625)
chr7 (241-284)||(46676262-46676305)
chr7 (246-284)||(7329072-7329110)
chr7 (240-281)||(8593984-8594026)
chr7 (242-272)||(40426853-40426883)
chr7 (241-282)||(10590299-10590340)
chr7 (237-318)||(43660349-43660430)
chr7 (240-288)||(2888180-2888228)
chr7 (239-279)||(30580634-30580674)
chr7 (240-288)||(34808989-34809037)
chr7 (240-288)||(42817798-42817846)
[»] chr2 (22 HSPs)
chr2 (237-287)||(7754968-7755018)
chr2 (239-317)||(44987510-44987588)
chr2 (240-287)||(30201989-30202036)
chr2 (238-317)||(44986810-44986889)
chr2 (240-288)||(1141300-1141348)
chr2 (240-288)||(20606921-20606969)
chr2 (235-282)||(127741-127788)
chr2 (240-287)||(24394886-24394933)
chr2 (239-288)||(44296859-44296908)
chr2 (240-288)||(127033-127081)
chr2 (240-288)||(10173936-10173984)
chr2 (240-284)||(18537497-18537541)
chr2 (240-291)||(7754012-7754063)
chr2 (240-282)||(6873522-6873564)
chr2 (240-270)||(10365525-10365555)
chr2 (245-279)||(44297423-44297457)
chr2 (254-287)||(4716127-4716160)
chr2 (240-285)||(20606286-20606331)
chr2 (235-287)||(4879051-4879103)
chr2 (240-288)||(9157015-9157063)
chr2 (243-287)||(23458625-23458669)
chr2 (240-288)||(29387424-29387472)
[»] chr6 (6 HSPs)
chr6 (240-312)||(16718970-16719042)
chr6 (240-290)||(2138477-2138527)
chr6 (240-290)||(10966378-10966428)
chr6 (240-288)||(34423374-34423422)
chr6 (240-288)||(34423571-34423619)
chr6 (240-288)||(13084879-13084927)
[»] scaffold0627 (1 HSPs)
scaffold0627 (240-288)||(6464-6512)
[»] scaffold0006 (1 HSPs)
scaffold0006 (245-291)||(285183-285229)


Alignment Details
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 240 - 460
Target Start/End: Original strand, 27243446 - 27243670
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgttgcaaacaaa 339  Q
    |||||||| || || ||||||||||||||||||||||||||||||||||||||| ||||| |||  |||||||||||||||||||||| |||||||||||    
T  27243446 ggtggattataaggcgagggatcaattaagtccctcaccggtggaccacgaagaaattacagttgaatttaatcaatggatcatatttattgcaaacaaa 27243545  T
Q  340 attaagaacatctatatctttccgcatacaattttgtctcatctcttctcctatccatgttgttagttccatcacccacctcttgt----acgctcttct 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    ||||||||||    
T  27243546 attaagaacatctatatctttccgcatacaattttgtctcatctcttctcttatccatgttgatagttccatcacccacctcttgtatcaacgctcttct 27243645  T
Q  436 cctccaagttcgacttgttcatctc 460  Q
    |||||||||||||||||||| ||||    
T  27243646 cctccaagttcgacttgttcttctc 27243670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 240 - 460
Target Start/End: Original strand, 27255021 - 27255245
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgttgcaaacaaa 339  Q
    |||||||| || || ||||||||||||||||||||||||||||||||||||||| ||||| |||  |||||||||||||||||||||| |||||||||||    
T  27255021 ggtggattataaggcgagggatcaattaagtccctcaccggtggaccacgaagaaattacagttgaatttaatcaatggatcatatttattgcaaacaaa 27255120  T
Q  340 attaagaacatctatatctttccgcatacaattttgtctcatctcttctcctatccatgttgttagttccatcacccacctcttgt----acgctcttct 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    ||||||||||    
T  27255121 attaagaacatctatatctttccgcatacaattttgtctcatctcttctcttatccatgttgatagttccatcacccacctcttgtatcaacgctcttct 27255220  T
Q  436 cctccaagttcgacttgttcatctc 460  Q
    |||||||||||||||||||| ||||    
T  27255221 cctccaagttcgacttgttcttctc 27255245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 240 - 326
Target Start/End: Complemental strand, 42094792 - 42094706
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatt 326  Q
    |||| ||||||||||||||||||||||||||||||||||| || | || ||||| ||||| ||| ||||||||||||||||||||||    
T  42094792 ggtgaattctagggtgagggatcaattaagtccctcaccgatgaagcatgaagaaattacagttggatttaatcaatggatcatatt 42094706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 22632323 - 22632399
Alignment:
Q  241 gtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  || |||||||||||| ||||    
T  22632323 gtggattctagggtgagggatcaattaagtccctcaccggtggaccatgaaaataaaaccgttagatttaattaatg 22632399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 320
Target Start/End: Original strand, 42094009 - 42094089
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||| |||  |||||||||||||||    
T  42094009 ggtggattctagggtgagggatcaattaagtccctcaccggtgaagcatgaagaaattacagttgaatttaatcaatggat 42094089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 22633016 - 22632969
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22633016 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 22632969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 5434032 - 5434084
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaag 292  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||||||||||    
T  5434032 ggtggattctagggtgagggtccaattaagtccttcaccggtggaccacgaag 5434084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 26847097 - 26847173
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaat 316  Q
    ||||||||||||||||||||  ||||||||||||||||||||| |||||| | | | |||  |||||||||||||||    
T  26847097 ggtggattctagggtgagggtccaattaagtccctcaccggtgaaccacggaaaaaataccattagatttaatcaat 26847173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 16911094 - 16911047
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  16911094 ggtggattctagggtgagggctcaattaagtccctcaccggtgtacca 16911047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 26847771 - 26847721
Alignment:
Q  238 tgggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||| |||||    
T  26847771 tgggtggattctaggatgagggatcaattaagttcctcaccggtgaaccac 26847721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 4402336 - 4402287
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||||||||||||| || ||||||||||||||||||| |||||    
T  4402336 gggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 4402287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 317
Target Start/End: Complemental strand, 35399991 - 35399914
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatg 317  Q
    ||||||||||||| |||||||||||| || ||||||||||||||||||  || |||  || |||||||||||| ||||    
T  35399991 ggtggattctaggatgagggatcaatcaaatccctcaccggtggaccaaaaaaataagaccgttagatttaattaatg 35399914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 36403078 - 36403023
Alignment:
Q  235 aattgggtggattctagggtgagggatcaattaagtccctcaccggtggaccacga 290  Q
    |||| |||||||||||| |||||||  |||||| ||||||||||||||||||||||    
T  36403078 aatttggtggattctagagtgagggtccaattaggtccctcaccggtggaccacga 36403023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 278
Target Start/End: Complemental strand, 9277830 - 9277792
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcacc 278  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  9277830 ggtggattctagggtgagggagcaattaagtccctcacc 9277792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 36402196 - 36402252
Alignment:
Q  235 aattgggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaa 291  Q
    |||| |||||||| |||||||||||  |||||| ||||| |||||||||||||||||    
T  36402196 aatttggtggattttagggtgagggtccaattaggtcccacaccggtggaccacgaa 36402252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 315
Target Start/End: Complemental strand, 12644105 - 12644030
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaa 315  Q
    ||||| |||||||||||||| || || |||||||||| ||||||| ||| |||| | ||| || ||||||||||||    
T  12644105 ggtggtttctagggtgagggttctatcaagtccctcatcggtggaacaccaagaaaataccgtcagatttaatcaa 12644030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 36180692 - 36180735
Alignment:
Q  245 attctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||||||| | |||||||||||||||||||| |||||    
T  36180692 attctagggtgagggtttaattaagtccctcaccggtgaaccac 36180735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 42664045 - 42663998
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||| ||| ||||||||||| ||||||||||||||||| |||||||||    
T  42664045 ggtgaattttagggtgagggttcaattaagtccctcactggtggacca 42663998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 44376643 - 44376694
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaa 291  Q
    |||||||||||||| |||||  |||||| |||||||| ||||||||||||||    
T  44376643 ggtggattctagggcgagggtccaattacgtccctcatcggtggaccacgaa 44376694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 44656365 - 44656326
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccg 279  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  44656365 ggtggattctaaggtgagggagcaattaagtccctcaccg 44656326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 202577 - 202619
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    |||| |||||||| |||||| ||||||||||||||||||||||    
T  202577 ggtgaattctaggatgagggttcaattaagtccctcaccggtg 202619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 317414 - 317456
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    |||| |||||||| |||||| ||||||||||||||||||||||    
T  317414 ggtgaattctaggatgagggttcaattaagtccctcaccggtg 317456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 9277193 - 9277243
Alignment:
Q  237 ttgggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||||||||||||||||| || |  |||||||||| ||||||||||    
T  9277193 ttgggtggattctagggtgagggttctaacaagtccctcatcggtggacca 9277243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 35399177 - 35399223
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggtggac 285  Q
    ||||||| |||||||||||||  ||||||| ||||||||||||||||    
T  35399177 gggtggaatctagggtgaggggccaattaaatccctcaccggtggac 35399223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 54753 - 54794
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggt 281  Q
    |||| |||||||||||||  ||||||||||||||||||||||    
T  54753 ggtgaattctagggtgagatatcaattaagtccctcaccggt 54794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 9929195 - 9929248
Alignment:
Q  235 aattgggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||| |||| |||||| |||||||| || | |||||||||||||||||||||||    
T  9929195 aattaggtgaattctaaggtgagggctctactaagtccctcaccggtggaccac 9929248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 31713917 - 31713868
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||||||||||||| || |  |||||||||||| |||||||||    
T  31713917 gggtggattctagggtgagggttctaacaagtccctcacccgtggaccac 31713868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 36182170 - 36182121
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||| |||||| || ||||| |||||||||||||||||||||| |||||    
T  36182170 gggtgaattctatggcgagggttcaattaagtccctcaccggtgaaccac 36182121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 5434817 - 5434765
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaag 292  Q
    |||||||||||| ||||| |  ||||||||||||||| |||||||||| ||||    
T  5434817 ggtggattctagagtgagagtccaattaagtccctcatcggtggaccatgaag 5434765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 284
Target Start/End: Complemental strand, 16718413 - 16718381
Alignment:
Q  252 ggtgagggatcaattaagtccctcaccggtgga 284  Q
    |||||||| ||||||||||||||||||||||||    
T  16718413 ggtgagggctcaattaagtccctcaccggtgga 16718381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 19220913 - 19220961
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||| |||||||| |||||| |||||||||||| |||||||| ||||||    
T  19220913 ggtgaattctaggatgagggttcaattaagtccgtcaccggtagaccac 19220961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 31713391 - 31713443
Alignment:
Q  235 aattgggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||||||||||||||||| || || |  |||||||||| ||||||||||    
T  31713391 aattgggtggattctagggtgaaggttctaacaagtccctcatcggtggacca 31713443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 35125414 - 35125378
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctca 276  Q
    |||||||| || |||||||||||||||||||||||||    
T  35125414 ggtggattttaaggtgagggatcaattaagtccctca 35125378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 42663277 - 42663321
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtgga 284  Q
    |||||||||||||||||| |  |||||||||| ||||||||||||    
T  42663277 ggtggattctagggtgagagtccaattaagtctctcaccggtgga 42663321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 7389157 - 7389317
Alignment:
Q  19 acttacaagcaaacgcagcaaacaaaggattcattgatttcttgttcttgttcatctttgaatacgttgttttcttcttccattttctgcgaagcgaaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7389157 acttacaagcaaacgcagcaaacaaaggattcattgatttcttgttcttgttcatctttgaatacgttgttttcttcttccattttctgcgaagccaaat 7389256  T
Q  119 tcggcagcggaatgtaagtgggatgttcgtgttagttttcaatcgaactgctcaaaatgat 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7389257 tcggcagcggaatgtaagtgggatgttcgtgttagttttcaatcgaactgctcaaaatgat 7389317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 240 - 460
Target Start/End: Complemental strand, 1054030 - 1053806
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgttgcaaacaaa 339  Q
    ||||||||||| | |||||||||||||||  |||||| | ||| |||| ||||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  1054030 ggtggattctaagatgagggatcaattaaacccctcatcagtgaaccatgaagaaattacggttgaatttaatcaatggatcatatttgttgcaaacaaa 1053931  T
Q  340 attaagaacatctatatctttccgcatacaattttgtctcatctcttctcctatccatgttgttagttccatcacccacctcttgt----acgctcttct 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||    
T  1053930 attaagaacatctatatctttccgcatacaattttgtctcatctcttctcctatccatgttgttagttccatcacccacctcttgtatcaacgctcttct 1053831  T
Q  436 cctccaagttcgacttgttcatctc 460  Q
    |||||||||||  ||||||| ||||    
T  1053830 cctccaagttctgcttgttcttctc 1053806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 240 - 419
Target Start/End: Original strand, 13924793 - 13924979
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgttgcaaacaaa 339  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||| | | |||||||  |||||||||||| ||||||||||||| |||||||    
T  13924793 ggtggattctagggtgagggctcaattaaatccctcaccggtggaccacgaaaaaagtacggttgaatttaatcaatgcatcatatttgttggaaacaaa 13924892  T
Q  340 attaagaacatctatatctttccgcatacaattt-------tgtctcatctcttctcctatccatgttgttagttccatcacccacc 419  Q
    |||| ||||||||| || |||||  |||||||||       |||||||||| ||||||||||||||||||||||| || ||||||||    
T  13924893 attaggaacatctacatgtttccaaatacaattttgtcacatgtctcatcttttctcctatccatgttgttagtttcaacacccacc 13924979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 240 - 326
Target Start/End: Complemental strand, 13925697 - 13925611
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatt 326  Q
    |||||||||||  |||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||    
T  13925697 ggtggattctaaagtgagggatcaactaagtccctcaccggtggaccacaaagaaattacggttagatctaatcaatggatcatatt 13925611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 353
Target Start/End: Complemental strand, 18363697 - 18363588
Alignment:
Q  244 gattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgttgcaaacaaaatta 343  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||| | |||  || |||| ||||||||| | | |||| ||| ||| ||||||     
T  18363697 gattctagggtgagggttcaattaagttcctcaccggtggaccacgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataaaattg 18363598  T
Q  344 agaacatcta 353  Q
    ||||||||||    
T  18363597 agaacatcta 18363588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 353
Target Start/End: Original strand, 36599231 - 36599340
Alignment:
Q  244 gattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgttgcaaacaaaatta 343  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||| | |||  || |||| ||||||||| | | |||| ||| ||| ||||||     
T  36599231 gattctagggtgagggttcaattaagttcctcaccggtggaccacgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataaaattg 36599330  T
Q  344 agaacatcta 353  Q
    ||||||||||    
T  36599331 agaacatcta 36599340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 14527624 - 14527576
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14527624 ggtggattctagggtgagggatcaattaagtccctcaccggtgaaccac 14527576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 24666129 - 24666176
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24666129 ggtggattctagggtgagggatcaattaagtccctcaccggtgaacca 24666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 25725857 - 25725809
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  25725857 gggtggagtctagggtgagggagcaattaagtccctcaccggtggacca 25725809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 34450815 - 34450859
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtgga 284  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  34450815 ggtgaattctagggtgagggatcaattaagtccctcaccggtgga 34450859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 53778461 - 53778373
Alignment:
Q  242 tggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgtt 330  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||||  | ||  |||||||| ||| ||||||||  |||||||    
T  53778461 tggattctagggtgagggtccatttaagtccctcaccggtggaccacgaaggaaatatcgttagattaaatgaatggatccgatttgtt 53778373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 34451485 - 34451443
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  34451485 ggtggattctagggtgagggatcaattaagtacctcaccggtg 34451443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 24666900 - 24666787
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgttgcaaacaaa 339  Q
    |||||||| ||||||||||| ||||||||||||||| | ||||||||| ||| | | ||| ||| |||| ||||||||| | | |||| ||| ||| ||     
T  24666900 ggtggattatagggtgagggttcaattaagtccctccctggtggaccatgaaaaaaataccgtttgattgaatcaatggttgagatttattgaaaataag 24666801  T
Q  340 attaagaacatcta 353  Q
    ||| ||||||||||    
T  24666800 attgagaacatcta 24666787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 34941502 - 34941615
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgttgcaaacaaa 339  Q
    |||||||||||||||||||| |||||||||||||||||  ||||| || ||||| | ||| ||| |||| |||||| || | | |||| ||| ||| |||    
T  34941502 ggtggattctagggtgagggttcaattaagtccctcactagtggatcatgaagaaaataccgtttgattgaatcaacggttgagatttattgaaaataaa 34941601  T
Q  340 attaagaacatcta 353  Q
     || ||||||||||    
T  34941602 gttgagaacatcta 34941615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 6057047 - 6056999
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||||||||||||||| || | |||||||||||||||||||||||    
T  6057047 ggtggattctagggtgagggttctactaagtccctcaccggtggaccac 6056999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 26354280 - 26354232
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  26354280 ggtgggttctagggtgagggttcaattaagtccctcacaggtggaccac 26354232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 35605990 - 35606038
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||||||||||||||||| |||||||||||||||  |||||||||    
T  35605990 gggtggattctagggtgagggagcaattaagtccctcattggtggacca 35606038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 51387173 - 51387125
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||| ||||||||||||||||||| |||||||||||||| |||||    
T  51387173 ggtggattatagggtgagggatcaattacgtccctcaccggtgaaccac 51387125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 20143280 - 20143327
Alignment:
Q  241 gtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||||||||||| |||| ||||||||||||||||| |||||    
T  20143280 gtggattctagggtgagggctcaactaagtccctcaccggtgtaccac 20143327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 38519233 - 38519187
Alignment:
Q  242 tggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  38519233 tggattctagggtgaaggagcaattaagtccctcaccggtgtaccac 38519187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 7389336 - 7389377
Alignment:
Q  196 tgcggttgtattcagcttagtttactgtttaaaaggttgaat 237  Q
    |||||||| ||||||||||||||||| |||||||||||||||    
T  7389336 tgcggttggattcagcttagtttactatttaaaaggttgaat 7389377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 51386456 - 51386505
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacg 289  Q
    |||||||| ||||||||||| |||||||||||||||||| ||| ||||||    
T  51386456 ggtggattttagggtgagggttcaattaagtccctcaccagtgaaccacg 51386505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 52129420 - 52129465
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggtgga 284  Q
    |||||||||||| |||||||| ||||||||||||||||| ||||||    
T  52129420 gggtggattctaaggtgagggttcaattaagtccctcactggtgga 52129465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 42792775 - 42792819
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtgga 284  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||    
T  42792775 ggtggattctagggtgagggtccaattaagtccctcaccgatgga 42792819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 47157427 - 47157383
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtgga 284  Q
    |||| ||||||||||||||| |||||||| |||||||||||||||    
T  47157427 ggtgaattctagggtgagggttcaattaaatccctcaccggtgga 47157383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 47764147 - 47764059
Alignment:
Q  242 tggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgtt 330  Q
    ||||||||||||| |||| ||||| || |||||||||||||||||| ||| |   |||  | |||||||||||| || |||||||||||    
T  47764147 tggattctagggtaagggttcaatcaaatccctcaccggtggaccatgaaaaatataccataagatttaatcaaaggttcatatttgtt 47764059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 6258194 - 6258155
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccg 279  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  6258194 ggtggattctaaggtgagggagcaattaagtccctcaccg 6258155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 271
Target Start/End: Original strand, 18362935 - 18362966
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtc 271  Q
    ||||||||||||||||||||||||||||||||    
T  18362935 ggtggattctagggtgagggatcaattaagtc 18362966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 21527073 - 21527034
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccg 279  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  21527073 ggtggattctagggtgagggctctattaagtccctcaccg 21527034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 25055109 - 25055156
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||||||||||||||| |||||||||| |||||  |||||||||    
T  25055109 ggtggattctagggtgagggttcaattaagttcctcattggtggacca 25055156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 36248399 - 36248446
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||| |||||| ||||||||| ||||||| ||||||||||||||||||    
T  36248399 ggtgaattctaaggtgagggagcaattaaatccctcaccggtggacca 36248446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 271
Target Start/End: Complemental strand, 36599991 - 36599960
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtc 271  Q
    ||||||||||||||||||||||||||||||||    
T  36599991 ggtggattctagggtgagggatcaattaagtc 36599960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 284
Target Start/End: Original strand, 47156638 - 47156677
Alignment:
Q  245 attctagggtgagggatcaattaagtccctcaccggtgga 284  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  47156638 attctagggtgagggttcaattaagtccctcatcggtgga 47156677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 53777822 - 53777873
Alignment:
Q  241 gtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaag 292  Q
    ||||||| |||| ||||||  |||||||||| ||||||||||||||||||||    
T  53777822 gtggattttaggatgagggtccaattaagtctctcaccggtggaccacgaag 53777873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 21281209 - 21281159
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacga 290  Q
    ||||||||||||||||||||  ||||||  ||||||| |||||||||||||    
T  21281209 ggtggattctagggtgagggtccaattagatccctcatcggtggaccacga 21281159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 26393442 - 26393404
Alignment:
Q  244 gattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    |||||||||||||||| || |||||||||||||||||||    
T  26393442 gattctagggtgagggctctattaagtccctcaccggtg 26393404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 35606691 - 35606641
Alignment:
Q  238 tgggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||| ||||||||||||||| | | ||||||||||| |||||||||||    
T  35606691 tgggtgggttctagggtgagggagctactaagtccctcatcggtggaccac 35606641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 21837389 - 21837430
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggt 281  Q
    ||||||||||||||||||||  ||| ||||||||||||||||    
T  21837389 ggtggattctagggtgagggtccaactaagtccctcaccggt 21837430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 21280030 - 21280086
Alignment:
Q  235 aattgggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaa 291  Q
    |||||||||||||||||| ||||||  |||||| |||||| || ||||||| |||||    
T  21280030 aattgggtggattctaggatgagggtccaattaggtcccttactggtggactacgaa 21280086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 56226462 - 56226510
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||| | |||||||||||||||||| ||||||| || |||||    
T  56226462 ggtggattctaagatgagggatcaattaagtctctcaccgatgtaccac 56226510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 56227103 - 56227055
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||||||| ||||||| ||||| |||||| ||||||||| |||||    
T  56227103 ggtggattctagagtgagggctcaatgaagtccttcaccggtgtaccac 56227055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 241 - 419
Target Start/End: Complemental strand, 4060097 - 4059912
Alignment:
Q  241 gtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgttgcaaacaaaa 340  Q
    |||||||||||| |||||| |||||||| ||| |||||||||||||||||||| | |||| || ||||||||||||| ||||||||||||| ||||||||    
T  4060097 gtggattctaggatgagggctcaattaaatccgtcaccggtggaccacgaagaaagtacgattggatttaatcaatgcatcatatttgttggaaacaaaa 4059998  T
Q  341 ttaagaacatctatatctttccgcatacaattttgtc-------tcatctcttctcctatccatgttgttagttccatcacccacc 419  Q
    ||| ||||||||| || ||||| ||||||||||||||       |||||| |||| |||||||||||||||||| || ||||||||    
T  4059997 ttaggaacatctacatgtttccacatacaattttgtctcatgtctcatcttttcttctatccatgttgttagtttcaacacccacc 4059912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 235 - 353
Target Start/End: Complemental strand, 26240924 - 26240806
Alignment:
Q  235 aattgggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgttgcaa 334  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| | ||| ||| |||| ||||||||| | | |||| ||| ||    
T  26240924 aattaggtggattctagggtgagggttcaattaagtccctcaccggtggaccatgaagaaaataccgtttgattgaatcaatggttgagatttattgaaa 26240825  T
Q  335 acaaaattaagaacatcta 353  Q
    | || ||| ||||||||||    
T  26240824 ataatattgagaacatcta 26240806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 252 - 322
Target Start/End: Original strand, 4058886 - 4058956
Alignment:
Q  252 ggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatca 322  Q
    ||||||||||||| ||||||||||| ||||||||||| |||| ||||||||||||| ||||||||||||||    
T  4058886 ggtgagggatcaactaagtccctcatcggtggaccacaaagaaattacggttagatctaatcaatggatca 4058956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 12449360 - 12449312
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12449360 ggtggattttagggtgagggatcaattaagtccctcaccggtggaccac 12449312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 26240114 - 26240161
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26240114 ggtggattctagggtgagggatcaattaagtccctcaccggtgaacca 26240161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 16449555 - 16449597
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  16449555 ggtggattctagggtgagggttcaattaagtccctcaccggtg 16449597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 16459129 - 16459171
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  16459129 ggtggattctagggtgagggttcaattaagtccctcaccggtg 16459171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 33357777 - 33357733
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtgga 284  Q
    ||||||||||||||||||||||||  |||||||||||||||||||    
T  33357777 ggtggattctagggtgagggatcagataagtccctcaccggtgga 33357733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 50657189 - 50657141
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||| || |||||| |||||||||||||||||||||||||||    
T  50657189 ggtggattctaaggcgagggagcaattaagtccctcaccggtggaccac 50657141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 24847783 - 24847830
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||||    
T  24847783 ggtggattctagggtgagggttctattaagtccctcaccggtgtacca 24847830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 24848474 - 24848427
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||||    
T  24848474 ggtggattctagggtgagggttctattaagtccctcaccggtgtacca 24848427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 31116733 - 31116682
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggtggaccacga 290  Q
    |||||||||||||||||||||  |||||| ||||||||||||||||| ||||    
T  31116733 gggtggattctagggtgagggtccaattaggtccctcaccggtggactacga 31116682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 288
Target Start/End: Complemental strand, 34027013 - 34026970
Alignment:
Q  245 attctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  34027013 attctagagtgagagatcaattaagtccctcaccggtggaccac 34026970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 43553040 - 43552993
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||| |||||||||||||||||||||||| |||||| |||||||    
T  43553040 ggtggattatagggtgagggatcaattaagtccttcaccgatggacca 43552993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 31109239 - 31109289
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacga 290  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||| ||||    
T  31109239 ggtggattctagggtgagggtccaattaggtccctcaccggtggactacga 31109289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 14166951 - 14166914
Alignment:
Q  244 gattctagggtgagggatcaattaagtccctcaccggt 281  Q
    |||||||||||||||| |||||||||||||||||||||    
T  14166951 gattctagggtgagggctcaattaagtccctcaccggt 14166914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 51547590 - 51547639
Alignment:
Q  238 tgggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||||||||||||| || | |||||||||||| ||||||||||||    
T  51547590 tgggtggattctagggtgatggtttaattaagtcccttaccggtggacca 51547639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 5491381 - 5491333
Alignment:
Q  243 ggattctagggtgagggatcaattaagtccctcaccggtggaccacgaa 291  Q
    |||||||||| ||||||  |||||| |||||||||||||||||||||||    
T  5491381 ggattctaggatgagggtccaattaggtccctcaccggtggaccacgaa 5491333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 27746206 - 27746162
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtgga 284  Q
    |||||||||||| ||||||| |||||||||||||||||| |||||    
T  27746206 ggtggattctagcgtgagggttcaattaagtccctcaccagtgga 27746162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 6942191 - 6942238
Alignment:
Q  241 gtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||||| ||||||||||||||||||||| ||| ||||| |||||    
T  6942191 gtggattctaaggtgagggatcaattaagtccttcatcggtgaaccac 6942238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 279
Target Start/End: Original strand, 27745556 - 27745595
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccg 279  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  27745556 ggtggattctaaggtgagggttcaattaagtccctcaccg 27745595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 46253621 - 46253668
Alignment:
Q  235 aattgggtggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    |||| |||||||| ||||||||||||||||| |||||| |||||||||    
T  46253621 aattcggtggattttagggtgagggatcaatcaagtccttcaccggtg 46253668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 13416383 - 13416333
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacga 290  Q
    ||||||||||||| ||||||  |||||| ||||||| ||||||||||||||    
T  13416383 ggtggattctaggatgagggtccaattaggtccctcgccggtggaccacga 13416333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 281
Target Start/End: Original strand, 2260857 - 2260894
Alignment:
Q  244 gattctagggtgagggatcaattaagtccctcaccggt 281  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  2260857 gattctagggtgagggttcaatcaagtccctcaccggt 2260894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 381
Target Start/End: Complemental strand, 47571987 - 47571846
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgttgcaaacaaa 339  Q
    |||| |||||||||||||||||||||||||||||||||||||| | || ||||| ||||| ||| |||||||| |||||||||||||||||  ||| |||    
T  47571987 ggtgaattctagggtgagggatcaattaagtccctcaccggtgaaacatgaagaaattacagttggatttaattaatggatcatatttgttaaaaataaa 47571888  T
Q  340 attaagaacatctatatctttccgcatacaattttgtctcat 381  Q
    | | |||  ||||| | ||| || || |||||||||||||||    
T  47571887 aatgagagtatctacaccttcccacacacaattttgtctcat 47571846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 47571195 - 47571276
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggat 320  Q
    |||||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||| |||  |||||||||||||||    
T  47571195 gggtggattctagggtgagggatcaattaagtccctcaccggtgaagcatgaagaaattacagttgaatttaatcaatggat 47571276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 15287563 - 15287615
Alignment:
Q  236 attgggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  15287563 attgggtggattctagggtgagggtccaattaagtccctcaccggtggaccac 15287615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 49349676 - 49349718
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  49349676 ggtggattctagggtgagggatcaattaagtccctcaccggtg 49349718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 53242666 - 53242744
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatgg 318  Q
    |||||||| |||||||||| ||||||||||||||||| |||||||||||||||| | |||  || |||| |||||||||    
T  53242666 ggtggattatagggtgaggaatcaattaagtccctcatcggtggaccacgaagaaaataccatttgattgaatcaatgg 53242744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 24511993 - 24512041
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  24511993 gggtggattttagggtgagggagcaattaagtccctcaccggtggacca 24512041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 20807937 - 20807984
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  20807937 ggtggattctagggtgagggttcaattaagtccctcaccggtgtacca 20807984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 54308454 - 54308501
Alignment:
Q  241 gtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||    
T  54308454 gtggattctagggtgagggttcaattaagtccctcaccggtgaaccac 54308501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 9830573 - 9830619
Alignment:
Q  241 gtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  9830573 gtggattctcgggtgagggttcaattaagtccctcaccggtggacca 9830619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 53344789 - 53344747
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  53344789 ggtggattctagggtgagggatcaatcaagtccctcaccggtg 53344747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 3584005 - 3584053
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||||||||||||| ||||||| ||||||||||||| |||||    
T  3584005 ggtggattctagggtgagggagcaattaaatccctcaccggtgtaccac 3584053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 24515061 - 24515013
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||    
T  24515061 ggtggattctagggtgagggagttattaagtccctcaccggtggaccac 24515013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 47809161 - 47809117
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtgga 284  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||    
T  47809161 ggtggattctggggtgagggatcaatcaagtccctcaccggtgga 47809117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 53344017 - 53344061
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtgga 284  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||    
T  53344017 ggtggattctaggatgagggatcaatcaagtccctcaccggtgga 53344061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 4707004 - 4706957
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||||    
T  4707004 ggtggattctagggtgagggttctattaagtccctcaccggtgtacca 4706957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 14746041 - 14746092
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaa 291  Q
    ||||||||||||||||||||  ||||||| |||||| |||||||||||||||    
T  14746041 ggtggattctagggtgagggtccaattaaatccctccccggtggaccacgaa 14746092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 20808655 - 20808608
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||||||||||||||| |||| ||||||||||||||||| ||||    
T  20808655 ggtggattctagggtgagggttcaagtaagtccctcaccggtgtacca 20808608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 41419667 - 41419616
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaa 291  Q
    |||||||||||| |||||||  |||||| |||||||||||||||||||||||    
T  41419667 ggtggattctagtgtgaggggccaattaggtccctcaccggtggaccacgaa 41419616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 43454214 - 43454159
Alignment:
Q  235 aattgggtggattctagggtgagggatcaattaagtccctcaccggtggaccacga 290  Q
    |||| ||||||||||||||||||||  |||||| |||||||||| |||||||||||    
T  43454214 aattcggtggattctagggtgagggtccaattaggtccctcacctgtggaccacga 43454159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 279
Target Start/End: Original strand, 47808362 - 47808401
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccg 279  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  47808362 ggtggattctagggtgagggatcaatcaagtccctcaccg 47808401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 49350318 - 49350271
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||||||||||||||| ||||||||||||||| |||||| ||||    
T  49350318 ggtggattctagggtgagggttcaattaagtccctcgccggtgaacca 49350271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 52924481 - 52924434
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  52924481 ggtggattctaaggtgagggagcaattaagtccctcaccggtgcacca 52924434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 33761966 - 33762012
Alignment:
Q  236 attgggtggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    |||||||||||||||||||||||| || ||||||| |||||||||||    
T  33761966 attgggtggattctagggtgagggctctattaagttcctcaccggtg 33762012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 43453439 - 43453489
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacga 290  Q
    ||||||||||||||||||||  ||||||| |||||||||| ||||||||||    
T  43453439 ggtggattctagggtgagggtccaattaaatccctcaccgctggaccacga 43453489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 9831310 - 9831262
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||||| |||||||||  |||||||||||||||| ||||||||||    
T  9831310 ggtggattctggggtgagggtccaattaagtccctcactggtggaccac 9831262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 18745418 - 18745370
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||| ||||||||||||||| ||||| |||||||||||||||| |||||    
T  18745418 ggtgaattctagggtgagggttcaatcaagtccctcaccggtgcaccac 18745370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 14746949 - 14746899
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaa 291  Q
    ||||||||||||| ||||||  ||||||||||||||| ||||||||||||||    
T  14746949 ggtggattctagg-tgagggtccaattaagtccctcatcggtggaccacgaa 14746899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 16076210 - 16076260
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacga 290  Q
    ||||||||||||||||||||  |||||| ||||||||||  ||||||||||    
T  16076210 ggtggattctagggtgagggtccaattaggtccctcaccaatggaccacga 16076260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 29516592 - 29516554
Alignment:
Q  245 attctagggtgagggatcaattaagtccctcaccggtgg 283  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  29516592 attctacggtgagggttcaattaagtccctcaccggtgg 29516554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 46883764 - 46883806
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    ||||| |||||||||||||| || |||||||||||||||||||    
T  46883764 ggtggcttctagggtgagggctctattaagtccctcaccggtg 46883806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 51920720 - 51920762
Alignment:
Q  246 ttctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||||||  |||||||||||||||||| ||||||||    
T  51920720 ttctagggtgagggtccaattaagtccctcaccgatggaccac 51920762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 53343904 - 53343862
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    |||||||||||||||||||| ||||  ||||||||||||||||    
T  53343904 ggtggattctagggtgagggttcaaacaagtccctcaccggtg 53343862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 43479555 - 43479506
Alignment:
Q  244 gattctagggtgagggatcaattaagtccctcaccggtggaccacgaaga 293  Q
    |||||||||||||||| ||||||||||| |||| || ||||||| |||||    
T  43479555 gattctagggtgagggttcaattaagtctctcatcgatggaccatgaaga 43479506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 47677523 - 47677568
Alignment:
Q  242 tggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||||| |||||| ||||||||||||||||| |||| ||||    
T  47677523 tggattctaggatgagggttcaattaagtccctcactggtgaacca 47677568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 275
Target Start/End: Complemental strand, 48626160 - 48626127
Alignment:
Q  242 tggattctagggtgagggatcaattaagtccctc 275  Q
    |||||||||||||||||| |||||||||||||||    
T  48626160 tggattctagggtgagggttcaattaagtccctc 48626127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 53503 - 53551
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||| |||||| | ||||| |||||||||||| |||||||||    
T  53503 ggtggattctatggtgagagttcaatcaagtccctcaccagtggaccac 53551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 55375 - 55327
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||| |||||||| |||||| ||||||||||||||||||| | ||||||    
T  55375 ggtgaattctaggatgagggttcaattaagtccctcaccgatagaccac 55327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 2226746 - 2226706
Alignment:
Q  242 tggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    |||||||||||||||||| |||||||| |||||||| ||||    
T  2226746 tggattctagggtgagggttcaattaattccctcacaggtg 2226706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 33762741 - 33762689
Alignment:
Q  235 aattgggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||| ||| ||||||| |||||||| || ||||||||||||||||||| ||||    
T  33762741 aatttggtagattctaaggtgagggttctattaagtccctcaccggtgtacca 33762689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 38557277 - 38557237
Alignment:
Q  242 tggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    |||||| ||||||||||| || |||||||||||||||||||    
T  38557277 tggattttagggtgagggctctattaagtccctcaccggtg 38557237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 381
Target Start/End: Complemental strand, 33087514 - 33087373
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgttgcaaacaaa 339  Q
    |||| |||||||| |||||||||||| |||||||||||||||| | || ||||| ||||| ||| |||||||||||||||||||||||||   ||| |||    
T  33087514 ggtgaattctaggatgagggatcaatcaagtccctcaccggtgaagcatgaagaaattacagttggatttaatcaatggatcatatttgtcaaaaataaa 33087415  T
Q  340 attaagaacatctatatctttccgcatacaattttgtctcat 381  Q
    | | ||| |||||| | ||| || || |||||||||||||||    
T  33087414 aatgagagcatctacaccttcccacacacaattttgtctcat 33087373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 330
Target Start/End: Complemental strand, 35524930 - 35524835
Alignment:
Q  235 aattgggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgtt 330  Q
    |||| |||||||||||||||||||||||||||||||  ||||||||||||||| ||| | ||||| ||| |||||| | |||| |||| |||||||    
T  35524930 aatttggtggattctagggtgagggatcaattaagtttctcaccggtggaccatgaaaaaattacagttggatttattgaatgaatcagatttgtt 35524835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 320
Target Start/End: Original strand, 33086729 - 33086809
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggat 320  Q
    ||||||||||||| ||||||||||||||||||| ||||||||| | || ||||| ||||| |||  |||||||||||||||    
T  33086729 ggtggattctaggatgagggatcaattaagtccttcaccggtgaagcatgaagaaattacagttgaatttaatcaatggat 33086809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 24565568 - 24565651
Alignment:
Q  235 aattgggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatgg 318  Q
    |||| |||||||||||||||||||| |||||||| |||||||||||||||||| ||| | | |||  ||||||||||| |||||    
T  24565568 aattcggtggattctagggtgagggttcaattaaatccctcaccggtggaccatgaacaaaataccattagatttaattaatgg 24565651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 24606604 - 24606687
Alignment:
Q  235 aattgggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatgg 318  Q
    |||| |||||||||||||||||||| |||||||| |||||||||||||||||| ||| | | |||  ||||||||||| |||||    
T  24606604 aattcggtggattctagggtgagggttcaattaaatccctcaccggtggaccatgaacaaaataccattagatttaattaatgg 24606687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 39937954 - 39937906
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  39937954 ggtggattctagggtgagggttcagttaagtccctcaccggtggaccac 39937906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 330
Target Start/End: Original strand, 4095111 - 4095201
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgtt 330  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||| ||| | ||||  ||| |||||| | |||||| || |||||||    
T  4095111 gggtggattctagggtgagg-atcaattaagtctctcaccggtggaccatgaaaaaattagagttggatttattgaatggaccagatttgtt 4095201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 35524122 - 35524173
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaa 291  Q
    ||||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  35524122 ggtggattctaggatgagagttcaattaagtccctcaccggtggaccacgaa 35524173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 2029095 - 2029053
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  2029095 ggtggattctagggtgagggctcaattaagtccctcaccggtg 2029053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 20476165 - 20476123
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggt 281  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  20476165 gggtggattttagggtgagggatcaattaagtccctcaccggt 20476123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 23253534 - 23253485
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacg 289  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  23253534 ggtggattctagggtgagggtccaattaagtccctcaccggtgaaccacg 23253485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 40372208 - 40372163
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggac 285  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||    
T  40372208 ggtggattctagggtgagggttcaattaagttcctcaccggtggac 40372163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 16195177 - 16195129
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||||||||||||||||||||||||| |||| |||| |||||    
T  16195177 ggtggattctagggtgagggatcaattaagtccatcactggtgtaccac 16195129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 38129125 - 38129173
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  38129125 gggtggattctaaggtgagggagcaattaagtccctcaccggtgtacca 38129173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 39466885 - 39466933
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||| |||||||||||||||  |||||||||||||||||||||||||||    
T  39466885 ggtgaattctagggtgagggtccaattaagtccctcaccggtggaccac 39466933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 27345967 - 27345928
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccg 279  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  27345967 ggtggattctagggtgagggttcaattaagtccctcaccg 27345928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 15561411 - 15561457
Alignment:
Q  241 gtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||||||||||||| || | ||||||||||||||||||||||    
T  15561411 gtggattctagggtgagggctctactaagtccctcaccggtggacca 15561457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 4082993 - 4083038
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggac 285  Q
    ||||||||||||||||||||| | ||||||||||||| ||||||||    
T  4082993 ggtggattctagggtgagggagctattaagtccctcatcggtggac 4083038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 29595643 - 29595595
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||||||| ||||||| |||||||||||||||||| ||| ||||    
T  29595643 gggtggattctagcgtgagggttcaattaagtccctcaccagtgtacca 29595595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 38129892 - 38129844
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||| || ||||||||| ||||||||||||||||||||| ||||    
T  38129892 gggtggattttaaggtgagggaacaattaagtccctcaccggtgtacca 38129844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 4083708 - 4083669
Alignment:
Q  248 ctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  4083708 ctagggtgagggagcaattaagtccctcatcggtggacca 4083669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 39936255 - 39936293
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcacc 278  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  39936255 ggtggattctaaggtgagggttcaattaagtccctcacc 39936293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 4095920 - 4095871
Alignment:
Q  242 tggattctagggtgagggatcaattaagtccctcaccggtggaccacgaa 291  Q
    |||||| |||||||||||  ||||||| |||||||||| |||||||||||    
T  4095920 tggattttagggtgagggtccaattaaatccctcaccgatggaccacgaa 4095871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 23257319 - 23257360
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggt 281  Q
    |||||||||||| |||||||  ||||||||||||||||||||    
T  23257319 ggtggattctagagtgagggtccaattaagtccctcaccggt 23257360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 39467692 - 39467643
Alignment:
Q  235 aattgggtggattctagggtgagggatcaattaagtccctcaccggtgga 284  Q
    ||||| ||| ||||||||||||||| | |||||||||||||| |||||||    
T  39467692 aattgagtgaattctagggtgagggtttaattaagtccctcatcggtgga 39467643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 2028337 - 2028385
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||| ||||||||||| |||| |||||||||| ||| ||||||||    
T  2028337 ggtggattttagggtgagggttcaactaagtccctcgccgatggaccac 2028385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 8743148 - 8743108
Alignment:
Q  241 gtggattctagggtgagggatcaattaagtccctcaccggt 281  Q
    |||||||||| ||||| || |||||||||||||||||||||    
T  8743148 gtggattctaaggtgaaggttcaattaagtccctcaccggt 8743108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 29594906 - 29594954
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||||||||||||||| |||||||||| | |||||| || |||||    
T  29594906 ggtggattctagggtgagggttcaattaagttcttcaccgatgtaccac 29594954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 370
Target Start/End: Original strand, 8349 - 8475
Alignment:
Q  242 tggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgttgcaaacaaaat 341  Q
    |||||| ||| |||| || |||||||| |||||||| |||||||||| |||| || |||||| |||||| |||||| ||||||||||||| |||||||||    
T  8349 tggattttagagtgaaggctcaattaaatccctcactggtggaccacaaagaaat-acggttggattta-tcaatgcatcatatttgttggaaacaaaat 8446  T
Q  342 taagaacatctatatctttccgcatacaa 370  Q
    |||||||||||| || ||||| |||||||    
T  8447 taagaacatctacatgtttccacatacaa 8475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 41965828 - 41965773
Alignment:
Q  237 ttgggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaag 292  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  41965828 ttgggtggattctagggtgagggtccaattaagtccctcaccggtggaccacgaag 41965773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 28007157 - 28007204
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28007157 ggtggattctagggtgagggagcaattaagtccctcaccggtggacca 28007204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 330
Target Start/End: Original strand, 41617192 - 41617282
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgtt 330  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||| ||| | ||||| |||  ||||| | |||||| || |||||||    
T  41617192 ggtggattctagagtgagtgatcaattaagtccctcaccggtggaccatgaaaaaattacagttgaatttattgaatggaccagatttgtt 41617282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 44876980 - 44876934
Alignment:
Q  242 tggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  44876980 tggattctagggtgagggatcaattaagtccctcaccgatggaccac 44876934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 768019 - 767963
Alignment:
Q  235 aattgggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaa 291  Q
    |||| |||||||| |||||||||||  ||||||||||||||||||||||||||||||    
T  768019 aatttggtggattttagggtgagggtccaattaagtccctcaccggtggaccacgaa 767963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 41359019 - 41358972
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  41359019 ggtggattctagggtgagggatcaattaagtccatcaccagtggacca 41358972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 24874626 - 24874576
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacga 290  Q
    |||||||||||||||||||| ||||||| |||||||| |||||||||||||    
T  24874626 ggtggattctagggtgagggttcaattaggtccctcatcggtggaccacga 24874576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 36611542 - 36611464
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatgg 318  Q
    |||||||||||||||||||| |||||||| || ||||||||||||||| ||| | | |||  ||||||||||| |||||    
T  36611542 ggtggattctagggtgagggttcaattaaatctctcaccggtggaccatgaacaaaataccattagatttaattaatgg 36611464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 3314954 - 3315003
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||||||| |||||||| |||||||||||||||||||||| |||||    
T  3314954 gggtggattctacggtgagggttcaattaagtccctcaccggtgtaccac 3315003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 46491736 - 46491691
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggac 285  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||    
T  46491736 ggtggattctagggtgagggttcaactaagtccctcaccggtggac 46491691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 767136 - 767180
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtgga 284  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  767136 ggtggattctagggtgagggtccaattaagtccctcaccggtgga 767180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 35892351 - 35892303
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||||||||||||| ||||||| ||||||||||||| |||||    
T  35892351 ggtggattctagggtgagggagcaattaaatccctcaccggtgtaccac 35892303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 41965112 - 41965164
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaag 292  Q
    ||||||||||||||||||||  |||||||||||||||  ||||||||||||||    
T  41965112 ggtggattctagggtgagggtccaattaagtccctcattggtggaccacgaag 41965164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 42818601 - 42818557
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtgga 284  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||    
T  42818601 ggtgaattctagggtgagggttcaattaagtccctcaccggtgga 42818557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 3849597 - 3849644
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||||||| |||||||||||| || ||||||||||||||||||    
T  3849597 ggtggattctaggatgagggatcaatcaaatccctcaccggtggacca 3849644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 28007861 - 28007814
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||||||||||| ||| | ||||||||||||||||||||||||    
T  28007861 ggtggattctagggtgatggagctattaagtccctcaccggtggacca 28007814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 36611556 - 36611599
Alignment:
Q  245 attctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||||||| |||||||||||||||||||||| |||||    
T  36611556 attctagggtgagggttcaattaagtccctcaccggtgaaccac 36611599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 41358311 - 41358358
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||||| || |||||||||||||||||||||||||| |||||||    
T  41358311 ggtggattcttggatgagggatcaattaagtccctcaccgatggacca 41358358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 44120358 - 44120405
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  44120358 ggtggattctaaggtgagggagcaattaagtccctcaccggtgtacca 44120405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 3850416 - 3850366
Alignment:
Q  238 tgggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||| |||||||||||||  ||||||| |||||||||||||||||||    
T  3850416 tgggtggaatctagggtgaggggccaattaaatccctcaccggtggaccac 3850366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 17114145 - 17114187
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    |||||||||||||||||||| |||||||||||||||| |||||    
T  17114145 ggtggattctagggtgagggttcaattaagtccctcatcggtg 17114187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 30581316 - 30581266
Alignment:
Q  238 tgggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||| ||||||||||||||| |||||||||||||||||| ||| |||||    
T  30581316 tgggtgaattctagggtgagggttcaattaagtccctcaccagtgaaccac 30581266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 33261464 - 33261410
Alignment:
Q  237 ttgggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaa 291  Q
    |||||||||||||||| ||||||  |||||||||||||||| | |||||||||||    
T  33261464 ttgggtggattctaggatgagggtccaattaagtccctcactgatggaccacgaa 33261410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 34807925 - 34807975
Alignment:
Q  237 ttgggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||| | |||| ||||||||| ||||||||||||||||||||||||||    
T  34807925 ttgggtgaagtctaaggtgagggagcaattaagtccctcaccggtggacca 34807975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 41618032 - 41617978
Alignment:
Q  237 ttgggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaa 291  Q
    ||||||||||||||| |||||||  |||||||||| |||||| ||||||||||||    
T  41618032 ttgggtggattctagagtgagggtccaattaagtctctcaccagtggaccacgaa 41617978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 3315511 - 3315470
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggt 281  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  3315511 ggtggattctaaggtgagggctcaattaagtccctcaccggt 3315470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 330
Target Start/End: Complemental strand, 38816083 - 38815994
Alignment:
Q  241 gtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatggatcatatttgtt 330  Q
    ||||||| |||| |||||||| ||||||| |||||||  ||| | ||| || | ||||| ||| |||||||| |||||||||||||||||    
T  38816083 gtggattttaggatgagggattaattaagcccctcactagtgaagcactaacaaattacagtttgatttaattaatggatcatatttgtt 38815994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 288
Target Start/End: Complemental strand, 37783524 - 37783481
Alignment:
Q  245 attctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||||||| || | |||||||||||||||||||||||    
T  37783524 attctagggtgagggctctactaagtccctcaccggtggaccac 37783481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 40427625 - 40427583
Alignment:
Q  244 gattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||    
T  40427625 gattctagggtgagggatcaa-taagtccctcaccagtggacca 40427583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 284
Target Start/End: Complemental strand, 46676305 - 46676262
Alignment:
Q  241 gtggattctagggtgagggatcaattaagtccctcaccggtgga 284  Q
    |||||||||||||| || ||||||||||||| ||||||||||||    
T  46676305 gtggattctagggtaagtgatcaattaagtctctcaccggtgga 46676262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 7329110 - 7329072
Alignment:
Q  246 ttctagggtgagggatcaattaagtccctcaccggtgga 284  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  7329110 ttctagggtgagggttcaattaagtccctcactggtgga 7329072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 8594026 - 8593984
Alignment:
Q  240 ggtggattctagggtgaggg-atcaattaagtccctcaccggt 281  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  8594026 ggtggattctagggtgagggaattaattaagtccctcaccggt 8593984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 272
Target Start/End: Original strand, 40426853 - 40426883
Alignment:
Q  242 tggattctagggtgagggatcaattaagtcc 272  Q
    |||||||||||||||||||||||||||||||    
T  40426853 tggattctagggtgagggatcaattaagtcc 40426883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 10590299 - 10590340
Alignment:
Q  241 gtggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    ||||||||||||||||| | |||||||||||||||| |||||    
T  10590299 gtggattctagggtgagagttcaattaagtccctcatcggtg 10590340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 318
Target Start/End: Complemental strand, 43660430 - 43660349
Alignment:
Q  237 ttgggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatgg 318  Q
    |||| |||||||||||||| ||    ||||||||||||||||||||||||| ||| | | ||  |||||||||||| |||||    
T  43660430 ttggatggattctagggtgtggttataattaagtccctcaccggtggaccatgaataaaataacgttagatttaattaatgg 43660349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 2888180 - 2888228
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||| ||||||||| || | ||||||||| |||||||||||||||    
T  2888180 ggtggattttagggtgagagagctattaagtccttcaccggtggaccac 2888228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 30580634 - 30580674
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccg 279  Q
    ||||||||||||||||||||| | ||||||||| |||||||    
T  30580634 gggtggattctagggtgagggtttaattaagtctctcaccg 30580674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 34809037 - 34808989
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||||||| ||||||| |||||||||||| ||| ||||| |||||    
T  34809037 ggtggattctagagtgagggttcaattaagtccttcatcggtgtaccac 34808989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 42817798 - 42817846
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||| |||||||||||| ||  ||||||||||||||| |||||||||||    
T  42817798 ggtgaattctagggtgatggtccaattaagtccctcatcggtggaccac 42817846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 7755018 - 7754968
Alignment:
Q  237 ttgggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7755018 ttgggtggattctagggtgagggatcaattaagtccttcaccggtggacca 7754968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 317
Target Start/End: Complemental strand, 44987588 - 44987510
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatg 317  Q
    ||||||||||||||||||||||||||||||||| ||||| |||| | || ||||| ||||| |||  ||||||||||||    
T  44987588 gggtggattctagggtgagggatcaattaagtctctcactggtgaagcatgaagaaattacagttgaatttaatcaatg 44987510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 30202036 - 30201989
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  30202036 ggtggattctaaggtgagggagcaattaagtccctcaccggtggacca 30201989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 44986810 - 44986889
Alignment:
Q  238 tgggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaatcaatg 317  Q
    |||||| |||||||||||||||||||||||||||||||| ||||| | || ||| | ||||| |||  ||||||||||||    
T  44986810 tgggtgaattctagggtgagggatcaattaagtccctcatcggtgaagcatgaataaattacagttgaatttaatcaatg 44986889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 1141300 - 1141348
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||||||||    
T  1141300 ggtggattctaaggtgagggagcaatgaagtccctcaccggtggaccac 1141348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 20606969 - 20606921
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||| ||||||||||||||| |||||||||||||||||||||| |||||    
T  20606969 ggtgaattctagggtgagggttcaattaagtccctcaccggtgaaccac 20606921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 127788 - 127741
Alignment:
Q  235 aattgggtggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    |||| |||||||||||||||||||| |||||||||||| |||||||||    
T  127788 aattaggtggattctagggtgagggttcaattaagtccttcaccggtg 127741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 24394933 - 24394886
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||||||| ||| |||||||||||||||||||| ||||||||||    
T  24394933 ggtggattctagagtgggggatcaattaagtccctcatcggtggacca 24394886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 44296859 - 44296908
Alignment:
Q  239 gggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||| |||||||||||||||  |||||||||||||||| ||||||||||    
T  44296859 gggtgaattctagggtgagggtccaattaagtccctcactggtggaccac 44296908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 127033 - 127081
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||||||||||||||| |||| ||||||||||| | |||||||||    
T  127033 ggtggattctagggtgagggttcaactaagtccctcatcagtggaccac 127081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 10173936 - 10173984
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||||||||||||||| ||  |||||||||||||||||| |||||    
T  10173936 ggtggattctagggtgagggttctgttaagtccctcaccggtgaaccac 10173984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 18537541 - 18537497
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtgga 284  Q
    ||||||||||| | |||||| ||||||||||||||||||||||||    
T  18537541 ggtggattctatgatgagggttcaattaagtccctcaccggtgga 18537497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 7754012 - 7754063
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaa 291  Q
    ||||||||||||||||||||  |||||| ||||||| |||||||| ||||||    
T  7754012 ggtggattctagggtgagggtccaattaggtccctccccggtggatcacgaa 7754063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 6873522 - 6873564
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtg 282  Q
    |||||||| ||||||||||| |||||||||||||| |||||||    
T  6873522 ggtggattttagggtgagggttcaattaagtcccttaccggtg 6873564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 270
Target Start/End: Complemental strand, 10365555 - 10365525
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagt 270  Q
    |||||||||||||||||||||||||||||||    
T  10365555 ggtggattctagggtgagggatcaattaagt 10365525  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 44297457 - 44297423
Alignment:
Q  245 attctagggtgagggatcaattaagtccctcaccg 279  Q
    ||||||||||||||| |||||||||||||||||||    
T  44297457 attctagggtgagggttcaattaagtccctcaccg 44297423  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 4716127 - 4716160
Alignment:
Q  254 tgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||||||||||||| |||||||||||||||    
T  4716127 tgagggatcaattaagtctctcaccggtggacca 4716160  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 20606286 - 20606331
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggac 285  Q
    |||||||| ||||||||||| | ||||||||||||||||| |||||    
T  20606286 ggtggattttagggtgagggtttaattaagtccctcaccgatggac 20606331  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 4879051 - 4879103
Alignment:
Q  235 aattgggtggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||||||||||||||||| || || |  |||||||||| ||||||||||    
T  4879051 aattgggtggattctagggtgaaggttctaacaagtccctcatcggtggacca 4879103  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 9157015 - 9157063
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||||||||| ||||| || ||||| ||||||||||||| |||||    
T  9157015 ggtggattctagggcgagggttctattaaatccctcaccggtgaaccac 9157063  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 23458669 - 23458625
Alignment:
Q  243 ggattctagggtgagggatcaattaagtccctcaccggtggacca 287  Q
    |||||||| |||||||| | ||||||||||||||||||| |||||    
T  23458669 ggattctacggtgagggtttaattaagtccctcaccggtagacca 23458625  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 29387424 - 29387472
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||| |||||||| ||||||| | ||||||| |||||||||||||||||    
T  29387424 ggtgaattctaggatgagggagctattaagttcctcaccggtggaccac 29387472  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 16719042 - 16718970
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacgaagatattacggttagatttaat 312  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||| | | ||  ||||||||||||    
T  16719042 ggtggattctagggtgacggatcaattaagtccctcaccggtggaccatgaacaaaatatcgttagatttaat 16718970  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 2138477 - 2138527
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacga 290  Q
    |||| |||||||||||||||  |||||| ||||||||||||||||||||||    
T  2138477 ggtgaattctagggtgagggtccaattaggtccctcaccggtggaccacga 2138527  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 10966428 - 10966378
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccacga 290  Q
    ||||||||||||||||| ||  |||||| ||||||||||||||||||||||    
T  10966428 ggtggattctagggtgaaggtccaattaggtccctcaccggtggaccacga 10966378  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 34423374 - 34423422
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||||||||||| |||||||| |||||||||||||||||| || |||||    
T  34423374 ggtggattctagtgtgagggagcaattaagtccctcaccgatgtaccac 34423422  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 34423619 - 34423571
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||||||||||||||||| | |||||||||||||||||| || |||||    
T  34423619 ggtggattctagggtgaggaagcaattaagtccctcaccgatgtaccac 34423571  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 13084927 - 13084879
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    |||| ||||||||||||||| |||| |||||| |||||||||| |||||    
T  13084927 ggtgaattctagggtgagggttcaactaagtctctcaccggtgtaccac 13084879  T

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Target: scaffold0627 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 6464 - 6512
Alignment:
Q  240 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccac 288  Q
    ||||| |||||||||||||| ||||||||||||||||||| ||||||||    
T  6464 ggtgggttctagggtgagggttcaattaagtccctcaccgatggaccac 6512  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 285183 - 285229
Alignment:
Q  245 attctagggtgagggatcaattaagtccctcaccggtggaccacgaa 291  Q
    |||||||||||||||  |||||| |||||| ||||||||||||||||    
T  285183 attctagggtgagggtccaattaggtcccttaccggtggaccacgaa 285229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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