View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_18 (Length: 466)
Name: NF3470_high_18
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 10 - 448
Target Start/End: Complemental strand, 30828753 - 30828315
Alignment:
| Q |
10 |
aataatatgcataaaacggcggcatgaaataaaaagcaaatcaacgcgacacaaataaagaatcaaagctcaaggcaaaaaagtgaacaaaggaacctat |
109 |
Q |
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| T |
30828753 |
aataaaatgcataaaacggcggcatgaaataaaaagcaaatcaacgcgacacaaataaagaatcaaagctcaaggcaaaaaagtgaacaaaggaacctat |
30828654 |
T |
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| Q |
110 |
tttcattaagatggtcaaatcattacaagaggggtcgccacatcggaattacataaacaataaaaagaaaaaccaaatcaccgaacatcttcttcgaaaa |
209 |
Q |
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| T |
30828653 |
tttcattaagatggtcaaatcattacaagaggggtcgccacatcggaattacataaacaataaaaagaaaaaccaaatcaccgaacatcttcttcgaaaa |
30828554 |
T |
|
| Q |
210 |
gtaggaggttgatccactcaaggaagaagcaggtgggcgcgctagtcgaggctctcaattccaagacgtaccgctcgctatacacccnnnnnnnncttcc |
309 |
Q |
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| T |
30828553 |
gtaggaggttgatccactcaaggaagaagcaggtgggcgcgctagtcgaggctctcaattccaagacgtaccgctcgctatacacccttttttttcttcc |
30828454 |
T |
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| Q |
310 |
ttaattgcacctacatcgattactcttggacttatccttctcgagaatatctggatgcaagcttggtccgggaaatctaggcgcaatcgaacttgtttga |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30828453 |
ttaattgcacctacatcgattactcttggacttatccttctcgagaatatctggatgcaagcttggtccgggaaatctaggcgcaatcgaacttgtttga |
30828354 |
T |
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| Q |
410 |
gaatgaatgtagttcccttagtttttgtcatggtgccca |
448 |
Q |
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| T |
30828353 |
gaatgaatgtagttcccttagtttttgtcatggtgccca |
30828315 |
T |
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