View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_19 (Length: 452)
Name: NF3470_high_19
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 38311574 - 38312013
Alignment:
| Q |
18 |
catggagtgcatcagttcttgcacctcattctcaaccacctcttccttcatgcatgccttccaatggccacactacttctattcctgaagacaccagcaa |
117 |
Q |
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| T |
38311574 |
catggagtgcatcagttcttgcacctcattctcaaccacctcttccttcatgcatgccttccaatggccacactacttctattcctgaagacaccagcaa |
38311673 |
T |
|
| Q |
118 |
ccactttgtctccgaggagctctcaaatctcaattgagtctaagagtcggttttctttcgcttactttgcaccttcgca-----------------ttat |
200 |
Q |
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| T |
38311674 |
ccactttgtctccgaggagctctcaaatctcaattgagtctaagagtcggttttctttcgcttactttgcaccttcgcagcttgttcttgagcgcattat |
38311773 |
T |
|
| Q |
201 |
gtcacactctgttagggaggtttttactactctttactaacaataaagacactcatacccacacatacccgcacacatatcctcagttaacgatgggcat |
300 |
Q |
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| T |
38311774 |
gtcacactctgttagggaggtttttactactctttactaacaataaagacactcatacccacacatacccacacacatatcctcagttaacaatgggcat |
38311873 |
T |
|
| Q |
301 |
tatctttattaatattgtttgttttgcatatgcaacaggatgtgtcgccattaacatcagatagaatatctctcagcagcgagcctttgaatcatggtgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38311874 |
tatctttattaatattgtttgttttgcatatgcaacaggatgtgtcgccattaacatcagatagaatatctctcagcagcgagcctttgaatcatggtgg |
38311973 |
T |
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| Q |
401 |
tgcattagccggatcagggagtccaccaatttgtcattca |
440 |
Q |
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| T |
38311974 |
tgcattagccggatcagggagtccaccaatttgtcattca |
38312013 |
T |
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