View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_2 (Length: 781)
Name: NF3470_high_2
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 368 - 766
Target Start/End: Original strand, 42306895 - 42307292
Alignment:
| Q |
368 |
tgaactcccctctaacatgctcttgaactctgctttcaaacgtagtcataacttgtcaactggttcaattccaaggagatagaagcactgtctcatcaca |
467 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42306895 |
tgaactcccctctaacatgctcttgaactccgctttcaaacgtggtcataacttgtcaactggttcaattccaaggagatagaagcactgtctcatcaca |
42306994 |
T |
|
| Q |
468 |
gtaagtgttgcttcacataacaagagtctactagtttcctcaggtgacccaacaacctggcaaagacattcacattaatacacaacaaataggattaata |
567 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42306995 |
gtaagtgttgcttcacataacaagagtctactagtttcctcaggtgacccaacaacctggcaaagacattcacattaatacacaacaaatagg-ttaata |
42307093 |
T |
|
| Q |
568 |
tgaacgacattcaaattaatagacagaatttatggccttggatacctgacaattagaataaaatttctttgtgaagatttcagccaaatcatataggtat |
667 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307094 |
tgaacgacattcaaattaatagacagaatttatggccttggatacctgacaattagaataaaatttctttgtgaagatttcagccaaatcatataggtat |
42307193 |
T |
|
| Q |
668 |
tcacacaacttgttggggagtaaattcgaacatgactccacaaaaacctgaaagatgaaaatctcatgtaagtgcatatatattttagattgtaaaatc |
766 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42307194 |
tcacacaacttgttggggagtaaattcgaacatgactccacaaaaacctgaaagatgaaaatctcatgtaagtgcatacatattttagattgtaaaatc |
42307292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 42306506 - 42306901
Alignment:
| Q |
1 |
attcttcaagatatgagaaagaaatgtggaagaaatattaactgtgcagtgactcaattatgaaaattttattgagaaaattagnnnnnnnnntaataat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42306506 |
attcttcaagatatgagaaagaaatgtggaagaaatattaactgtgcagtgactcaattatgaaaattttattgagaaaattagaaaaaaaa-taataat |
42306604 |
T |
|
| Q |
101 |
atagagaatttagtgaatattcttcaagatacacgaagtttaatactagaaattattttcaattctggttgttaacaatatagagaatcaagaagaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42306605 |
atagagaatttagtgaatattcttcaagatacactaagtttaatactagaaattattttcaattctggttgttaacaatatagagaatcaagaagagaga |
42306704 |
T |
|
| Q |
201 |
atcacaaaggagattagaattttaatagaataccatataataaaggttacaaagattatatatactaaacttaaaaggactagattactaatcatccctc |
300 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42306705 |
ataacaaaggagattagaattttaacagaataccatataataaaggttacaaagattatatataataaacttaaaaggactagattactaatcatccctc |
42306804 |
T |
|
| Q |
301 |
aaagtcacgatgcattaacagcgatagcctaaaaggtttgtcaactacgacaccaaaacgtactcgatgaactcccctctaacatgctcttgaactc |
397 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42306805 |
aaagtcacaatgcattaacagcgatagcctaaaaggtttgtcaactacgatgccaaaacgtactcgatgaactcccctctaacatgctcttgaactc |
42306901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 413 - 762
Target Start/End: Complemental strand, 51571484 - 51571136
Alignment:
| Q |
413 |
tcataacttgtcaactggttcaattccaaggagatagaagcactgtctcatcacagtaagtgttgcttcacataacaagagtctactagtttcctcaggt |
512 |
Q |
| |
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||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
51571484 |
tcataacttgtaaactggatcaattccaaggagatagaagcaatgtctcatcacaacaagtgttgcttcacataacaagagtctactagtttcctcaggc |
51571385 |
T |
|
| Q |
513 |
gacccaacaacctggcaaagacattcacattaatacacaacaaataggattaatatgaacgacattcaaattaat--agacagaatttatggccttggat |
610 |
Q |
| |
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|||||||||||||| ||||| |||||| ||||||||||| |||||||| |||| | | |||||||||| || ||| | || |||| | || ||| |
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| T |
51571384 |
gacccaacaacctgacaaaggcattcaaattaatacacagcaaatagg---aatagtgagggcattcaaattgatgcaga-aaaaattataactttcgat |
51571289 |
T |
|
| Q |
611 |
acctgacaattagaataaaatttctttgtgaagatttcagccaaatcatataggtattcacacaacttgttggggagtaaattcgaacatgactccacaa |
710 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| ||| || | ||||||||| ||||||||||||| |
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| T |
51571288 |
acctgacaactagaataaaatttctttgtgaagatttcggccaaattatacaggtattcacacaacacgtttggtaataaattcgagcatgactccacaa |
51571189 |
T |
|
| Q |
711 |
aaacctgaaagatgaaa-atctcatgtaagtgcatatatattttagattgtaa |
762 |
Q |
| |
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||||||||||||| ||| |||||| || ||||||||||| |||| |||||||| |
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| T |
51571188 |
aaacctgaaagataaaatatctcacgtgagtgcatatattttttggattgtaa |
51571136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 415 - 765
Target Start/End: Original strand, 47971560 - 47971914
Alignment:
| Q |
415 |
ataacttgtcaactggttcaattccaaggagatagaagcactgtctcatcacagtaagtgttgcttcacataacaagagtctactagtttcctcaggtga |
514 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||| || || |
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| T |
47971560 |
ataacttgtaaactggatcaattccaaggagatagaagcaatgcctcatcacaataagtgttgcttcacataacaagagtctactagtttcctccggcga |
47971659 |
T |
|
| Q |
515 |
cccaacaacctggcaaagacattcacattaatacacaacaaataggattaatatgaacgacattcaaattaatagacagaatttatggccttggatacct |
614 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||||| ||||||||| | || | | | |||||||| | ||| | ||||||| | | |||||||| |
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| T |
47971660 |
cccaacaacctgacaaaggcattcacattaatacacagcaaataggaat-atggggagggcattcaaactcgtaggaaaaatttataacatgggatacct |
47971758 |
T |
|
| Q |
615 |
gacaattagaataaaatttctttgtgaagatttcagccaaatcatataggtattcacacaacttgttggggagtaaattcgaacatgactccacaaaaac |
714 |
Q |
| |
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| ||| | |||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||| ||| || | |||||| || ||||||||||||||||| |
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| T |
47971759 |
ggcaacttgaataaaatttctttgtgaagatttcagacaaattatacaggtattcacataacacgtttggtaataaatttgagcatgactccacaaaaac |
47971858 |
T |
|
| Q |
715 |
ctgaaagat-----gaaaatctcatgtaagtgcatatatattttagattgtaaaat |
765 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| | |||| ||||||||||| |
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|
| T |
47971859 |
ctgaaagataaaagaaaaatctcatgtcagtgcatatgttttttggattgtaaaat |
47971914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 415 - 532
Target Start/End: Complemental strand, 34035367 - 34035250
Alignment:
| Q |
415 |
ataacttgtcaactggttcaattccaaggagatagaagcactgtctcatcacagtaagtgttgcttcacataacaagagtctactagtttcctcaggtga |
514 |
Q |
| |
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|||| |||| ||| |||||||||||||||||||| ||||||| |||||||||| ||||||||||||| ||| |||||||||||||||||||||| |
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| T |
34035367 |
ataatttgtaaacaggttcaattccaaggagataaaagcactttctcatcacaactgcagttgcttcacatagcaaaagtctactagtttcctcaggtgt |
34035268 |
T |
|
| Q |
515 |
cccaacaacctggcaaag |
532 |
Q |
| |
|
|| |||||||| ||||| |
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|
| T |
34035267 |
tcctacaacctgccaaag |
34035250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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