View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3470_high_20 (Length: 447)
Name: NF3470_high_20
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 6778175 - 6778605
Alignment:
| Q |
1 |
acgaggtattcgtttctgcatctgggtagctctcaaatttgagaatcttagctacgaaccttattgcttggttaaccgtatcattttccataaaaattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6778175 |
acgaggtattcgtttctgcatctgggtagctctcaaatttgagaatcttagctacgaaccttattgcttggttaaccgtatcattttccataaaaattgg |
6778274 |
T |
|
| Q |
101 |
tattgcatttactgggaagctcttgagcttctcaagaaaaatggtgttttagtaacttcagattccgttagagctttggttagatcttattctcatatgg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6778275 |
tattccatttactgggaagctcttgagcttctcaagaaaaatggtgttttagtaacttcagattccgttagagctttggttagatcttattctcatatgg |
6778374 |
T |
|
| Q |
201 |
gttataccgaaaaagctatagaatcatttagtagaatgcgtgaatttggtattgaacctgatgctcatatgtataacacaattttgagagatgtgttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6778375 |
gttataccgaaaaagctatagaatcattcagtagaatgcgtgaatttggtattgaacctgatgctcatatgtataacacaattttgagagatgtgttgaa |
6778474 |
T |
|
| Q |
301 |
tgaaaagttacttgagcttgctcttgcattgtatactaccatgcttaaatccaatgttgagcctaatttttatacttataatatgttgattgatggcttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6778475 |
tgaaaagttacttgagcttgctcttgcattgtatactaccatgcttaaatccaatgttgagcctaatttttatacttataatatgttgattgatggcttt |
6778574 |
T |
|
| Q |
401 |
tgtaaaaggggtgaagttaagggcgcacagg |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
6778575 |
tgtaaaaggggtgaagttaagggcgcacagg |
6778605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 17488903 - 17488473
Alignment:
| Q |
1 |
acgaggtattcgtttctgcatctgggtagctctcaaatttgagaatcttagctacgaaccttattgcttggttaaccgtatcattttccataaaaattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
17488903 |
acgaggtattcgtttctgcatctgggtagctctcaaatttgagaatcttagctacgaaccttattgcttggttaaccgtatccttttccatagaaattgg |
17488804 |
T |
|
| Q |
101 |
tattgcatttactgggaagctcttgagcttctcaagaaaaatggtgttttagtaacttcagattccgttagagctttggttagatcttattctcatatgg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17488803 |
tattccatttactgggaagctcttgagcttctcaagaaaaatggtgttttagtaacttcagattccgttagagctttggttagatcttattctcatatgg |
17488704 |
T |
|
| Q |
201 |
gttataccgaaaaagctatagaatcatttagtagaatgcgtgaatttggtattgaacctgatgctcatatgtataacacaattttgagagatgtgttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17488703 |
gttataccgaaaaagctatagaatcattcagtagaatgcgtgaatttggtattgaacctgatgctcatatgtataacacaattttgagagatgtgttgaa |
17488604 |
T |
|
| Q |
301 |
tgaaaagttacttgagcttgctcttgcattgtatactaccatgcttaaatccaatgttgagcctaatttttatacttataatatgttgattgatggcttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17488603 |
tgaaaagttacttgagcttgctcttgcattgtatactaccatgcttaaatccaatgttgagcctaatttttatacttataatatgttgattgatggcttt |
17488504 |
T |
|
| Q |
401 |
tgtaaaaggggtgaagttaagggcgcacagg |
431 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
|
|
| T |
17488503 |
tgtaaaaggggtgaagttaagggtgcacagg |
17488473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 43095624 - 43096063
Alignment:
| Q |
1 |
acgaggtattcgtttctgcatctgggtagctctcaaatttgagaatcttagctacgaaccttattgcttggttaaccgtatcattttccataaaaattgg |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| | | |
|
|
| T |
43095624 |
acgaggtattcgtttctgcatttgggtagctctcaaatttgagaatcttagctttgaaccttattgcttggttaaccgtatccttttccataaaaactag |
43095723 |
T |
|
| Q |
101 |
tattgcatttactgggaagctcttgagcttctcaagaaaaatggtgttttagtaacttcagattccgttagagctttggttagatcttattctcatatgg |
200 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43095724 |
tattccatttactaggaagctcttgagcttctcaagaaaaaaggtgttttagtaacttcagattccgttagagctttggttagatcttattcctatatgg |
43095823 |
T |
|
| Q |
201 |
gttataccgaaaaagctatagaatcatttagtagaatgcgtgaatttggtattgaacctgatgctcatatgtataacacaattttgagagatgtgttgaa |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43095824 |
gttataccaaaaaagctatagaatcattcgttagaatgcgcgaatttggtgttgaacctgatgctcatatgtataacacaattttgagagagatgttgaa |
43095923 |
T |
|
| Q |
301 |
tgaaaagttacttgagcttgctcttgcattgtatactaccatgcttaaatccaatgttgagcctaatttttatacttataatatgttgattgatggcttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43095924 |
tgaaaagttacttgagcttgctcttgcattgtatactaccatgcttaaatccaatgttgagcctaatttttatacttataatatgttgattgatggaatt |
43096023 |
T |
|
| Q |
401 |
tgtaaaaggggtgaagttaagggcgcacaggttctgctcg |
440 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
43096024 |
tgtaaaaggggtgaagttaagggtgcacaggagctgctcg |
43096063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University