View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_24 (Length: 421)
Name: NF3470_high_24
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 412
Target Start/End: Original strand, 38184657 - 38185049
Alignment:
| Q |
20 |
tttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttca |
119 |
Q |
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| T |
38184657 |
tttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttca |
38184756 |
T |
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| Q |
120 |
acggtgttaacaagtactttagggttggtttcttcatctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataata |
219 |
Q |
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| T |
38184757 |
acggtgttaacaagtactgtagggttggtttcttcatctagaacttgaatttgttctttgaaagatcgagtagcgatagtatatatatttgaagataata |
38184856 |
T |
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| Q |
220 |
aaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatg |
319 |
Q |
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| T |
38184857 |
aaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatg |
38184956 |
T |
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| Q |
320 |
ctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgc |
412 |
Q |
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| T |
38184957 |
ttcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgc |
38185049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 412
Target Start/End: Original strand, 38179988 - 38180380
Alignment:
| Q |
20 |
tttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttca |
119 |
Q |
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| T |
38179988 |
tttaccgcccaagaaagtatatggaatcaatggtccgattggtatcattttgatcttaccaacgtcaacggcttttagtgcctctaattcaaactcttca |
38180087 |
T |
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| Q |
120 |
acggtgttaacaagtactttagggttggtttcttcatctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataata |
219 |
Q |
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| T |
38180088 |
acggtgttaacaagtactttagggttggtttcttcatatagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataata |
38180187 |
T |
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| Q |
220 |
aaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatg |
319 |
Q |
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| T |
38180188 |
aaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgacgtagtcaccatg |
38180287 |
T |
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| Q |
320 |
ctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgc |
412 |
Q |
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| T |
38180288 |
ctcatgaaagtaataatagtagatatcaaaaactgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgc |
38180380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 28 - 409
Target Start/End: Original strand, 38170182 - 38170563
Alignment:
| Q |
28 |
ccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgtt |
127 |
Q |
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| T |
38170182 |
ccaagaaagcagatggaatcaacggtccgatgggtatcattttgatcttaccaacatcaactttattcagtgcatccagttcaaactcctcaacggtgtt |
38170281 |
T |
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| Q |
128 |
aacaagtactttagggttggtttcttcat-ctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaaga |
226 |
Q |
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| T |
38170282 |
cacaagtactcttgggttgatttcttcattcaacaact-gaatttgctctttgagagatggaagagcaaaagtgtatgtatttgaagccaataaaaaaga |
38170380 |
T |
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| Q |
227 |
gggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatga |
326 |
Q |
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| T |
38170381 |
gggaaggtcgcggcttttaagagagaatgacaatcccggtaatgatattaaacacgtttcatcctttgatttgtttgtgatgtagtcaccgtgttcatga |
38170480 |
T |
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| Q |
327 |
aagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctt |
409 |
Q |
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| T |
38170481 |
aagtaataatagaatatatcaaacaccgttgctgcttgaatccacaacagtgttgatgggaggtgaagctcatgtgccacctt |
38170563 |
T |
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