View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3470_high_33 (Length: 386)

Name: NF3470_high_33
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3470_high_33
NF3470_high_33
[»] chr8 (2 HSPs)
chr8 (1-223)||(3791210-3791432)
chr8 (221-373)||(3792824-3792977)
[»] chr7 (2 HSPs)
chr7 (1-223)||(12811647-12811869)
chr7 (221-373)||(12813261-12813414)
[»] chr4 (9 HSPs)
chr4 (1-223)||(1654522-1654744)
chr4 (1-223)||(37152178-37152400)
chr4 (1-223)||(45222496-45222718)
chr4 (1-223)||(9129458-9129680)
chr4 (221-373)||(9131073-9131225)
chr4 (221-373)||(37150632-37150784)
chr4 (221-373)||(45220952-45221104)
chr4 (221-373)||(1652978-1653130)
chr4 (333-373)||(26650795-26650835)
[»] chr1 (4 HSPs)
chr1 (1-223)||(23780450-23780672)
chr1 (1-223)||(52636271-52636493)
chr1 (221-373)||(23778906-23779058)
chr1 (221-373)||(52637885-52638037)
[»] chr2 (1 HSPs)
chr2 (224-278)||(32378403-32378457)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3791210 - 3791432
Alignment:
Q  1 tatgagaataaaataccccacgtacaatgcataaaacacaaaaatggttacgtgacatgaataattcttgaactccacaagtcattcactccataccttg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3791210 tatgagaataaaatacgccacgtacaatgcataaaacacaaaaatggttacgtgacatgaataattcttgaactccacaagtcattcactccataccctg 3791309  T
Q  101 caagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagcatgacatctttcttcatatgaggagtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3791310 caagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagcatgacatctttcttcatatgaggagtc 3791409  T
Q  201 ttgtatttattggaccctttaac 223  Q
    |||||||||||||||||||||||    
T  3791410 ttgtatttattggaccctttaac 3791432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 221 - 373
Target Start/End: Original strand, 3792824 - 3792977
Alignment:
Q  221 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactcatataaataaacattcacaaaatg-nnnnnnnnnnctcca 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||           |||||    
T  3792824 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactaatataaacaaacattcacaaaatgaaaaaaaaaaactcca 3792923  T
Q  320 tgtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttc 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3792924 tgtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttc 3792977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 12811647 - 12811869
Alignment:
Q  1 tatgagaataaaataccccacgtacaatgcataaaacacaaaaatggttacgtgacatgaataattcttgaactccacaagtcattcactccataccttg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12811647 tatgagaataaaatacgccacgtacaatgcataaaacacaaaaatggttacgtgacatgaataattcttgaactccacaagtcattcactccataccctg 12811746  T
Q  101 caagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagcatgacatctttcttcatatgaggagtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12811747 caagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagcatgacatctttcttcatatgaggagtc 12811846  T
Q  201 ttgtatttattggaccctttaac 223  Q
    |||||||||||||||||||||||    
T  12811847 ttgtatttattggaccctttaac 12811869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 221 - 373
Target Start/End: Original strand, 12813261 - 12813414
Alignment:
Q  221 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactcatataaataaacattcacaaaatg-nnnnnnnnnnctcca 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||           |||||    
T  12813261 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactaatataaacaaacattcacaaaatgaaaaaaaaaaactcca 12813360  T
Q  320 tgtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttc 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12813361 tgtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttc 12813414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1654744 - 1654522
Alignment:
Q  1 tatgagaataaaataccccacgtacaatgcataaaacacaaaaatggttacgtgacatgaataattcttgaactccacaagtcattcactccataccttg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1654744 tatgagaataaaatacgccacgtacaatgcataaaacacaaaaatggttacgtgacatgaataattcttgaactccacaagtcattcactccataccctg 1654645  T
Q  101 caagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagcatgacatctttcttcatatgaggagtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1654644 caagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagcatgacatctttcttcatatgaggagtc 1654545  T
Q  201 ttgtatttattggaccctttaac 223  Q
    |||||||||||||||||||||||    
T  1654544 ttgtatttattggaccctttaac 1654522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37152400 - 37152178
Alignment:
Q  1 tatgagaataaaataccccacgtacaatgcataaaacacaaaaatggttacgtgacatgaataattcttgaactccacaagtcattcactccataccttg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37152400 tatgagaataaaatacgccacgtacaatgcataaaacacaaaaatggttacgtgacatgaataattcttgaactccacaagtcattcactccataccctg 37152301  T
Q  101 caagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagcatgacatctttcttcatatgaggagtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37152300 caagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagcatgacatctttcttcatatgaggagtc 37152201  T
Q  201 ttgtatttattggaccctttaac 223  Q
    |||||||||||||||||||||||    
T  37152200 ttgtatttattggaccctttaac 37152178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 45222718 - 45222496
Alignment:
Q  1 tatgagaataaaataccccacgtacaatgcataaaacacaaaaatggttacgtgacatgaataattcttgaactccacaagtcattcactccataccttg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45222718 tatgagaataaaatacgccacgtacaatgcataaaacacaaaaatggttacgtgacatgaataattcttgaactccacaagtcattcactccataccctg 45222619  T
Q  101 caagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagcatgacatctttcttcatatgaggagtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45222618 caagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagcatgacatctttcttcatatgaggagtc 45222519  T
Q  201 ttgtatttattggaccctttaac 223  Q
    |||||||||||||||||||||||    
T  45222518 ttgtatttattggaccctttaac 45222496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9129458 - 9129680
Alignment:
Q  1 tatgagaataaaataccccacgtacaatgcataaaacacaaaaatggttacgtgacatgaataattcttgaactccacaagtcattcactccataccttg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9129458 tatgagaataaaatacgccacgtacaatgcataaaacacaaaaatggttacgtgacatgaataattcttgaactccacaagtcattcactccataccctg 9129557  T
Q  101 caagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagcatgacatctttcttcatatgaggagtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9129558 caagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagcatgacatctttcttcatatgaggagtc 9129657  T
Q  201 ttgtatttattggaccctttaac 223  Q
    || ||||||||||||||||||||    
T  9129658 ttatatttattggaccctttaac 9129680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 221 - 373
Target Start/End: Original strand, 9131073 - 9131225
Alignment:
Q  221 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactcatataaataaacattcacaaaatgnnnnnnnnnnctccat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          ||||||    
T  9131073 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactaatataaataaacattcacaaaatgaaaaaaaaaactccat 9131172  T
Q  321 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttc 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9131173 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttc 9131225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 221 - 373
Target Start/End: Complemental strand, 37150784 - 37150632
Alignment:
Q  221 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactcatataaataaacattcacaaaatgnnnnnnnnnnctccat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          ||||||    
T  37150784 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactaatataaataaacattcacaaaatgaaaaaaaaaactccat 37150685  T
Q  321 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttc 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37150684 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttc 37150632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 221 - 373
Target Start/End: Complemental strand, 45221104 - 45220952
Alignment:
Q  221 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactcatataaataaacattcacaaaatgnnnnnnnnnnctccat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          ||||||    
T  45221104 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactaatataaataaacattcacaaaatgaaaaaaaaaactccat 45221005  T
Q  321 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttc 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45221004 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttc 45220952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 221 - 373
Target Start/End: Complemental strand, 1653130 - 1652978
Alignment:
Q  221 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactcatataaataaacattcacaaaatgnnnnnnnnnnctccat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||          ||||||    
T  1653130 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactaatataaacaaacattcacaaaatgaaaaaaaaaactccat 1653031  T
Q  321 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttc 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1653030 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttc 1652978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 373
Target Start/End: Complemental strand, 26650835 - 26650795
Alignment:
Q  333 tcttcgatgttattgtaaaaaagttcagctacatcttcttc 373  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  26650835 tcttcaatgttattgtgaaaaagttcagctacatcttcttc 26650795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 23780672 - 23780450
Alignment:
Q  1 tatgagaataaaataccccacgtacaatgcataaaacacaaaaatggttacgtgacatgaataattcttgaactccacaagtcattcactccataccttg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23780672 tatgagaataaaatacgccacgtacaatgcataaaacacaaaaatggttacgtgacatgaataattcttgaactccacaagtcattcactccataccctg 23780573  T
Q  101 caagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagcatgacatctttcttcatatgaggagtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23780572 caagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagcatgacatctttcttcatatgaggagtc 23780473  T
Q  201 ttgtatttattggaccctttaac 223  Q
    |||||||||||||||||||||||    
T  23780472 ttgtatttattggaccctttaac 23780450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 52636271 - 52636493
Alignment:
Q  1 tatgagaataaaataccccacgtacaatgcataaaacacaaaaatggttacgtgacatgaataattcttgaactccacaagtcattcactccataccttg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  52636271 tatgagaataaaatacgccacgtacaatgcataaaacacaaaaatggttacgtgacatgaataattcttgaactccacaagtcattcactccataccctg 52636370  T
Q  101 caagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagcatgacatctttcttcatatgaggagtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52636371 caagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagcatgacatctttcttcatatgaggagtc 52636470  T
Q  201 ttgtatttattggaccctttaac 223  Q
    |||||||||||||||||||||||    
T  52636471 ttgtatttattggaccctttaac 52636493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 221 - 373
Target Start/End: Complemental strand, 23779058 - 23778906
Alignment:
Q  221 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactcatataaataaacattcacaaaatgnnnnnnnnnnctccat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          ||||||    
T  23779058 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactaatataaataaacattcacaaaatgaaaaaaaaaactccat 23778959  T
Q  321 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttc 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23778958 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttc 23778906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 221 - 373
Target Start/End: Original strand, 52637885 - 52638037
Alignment:
Q  221 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactcatataaataaacattcacaaaatgnnnnnnnnnnctccat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          ||||||    
T  52637885 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactaatataaataaacattcacaaaatgaaaaaaaaaactccat 52637984  T
Q  321 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttc 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52637985 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttc 52638037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 32378403 - 32378457
Alignment:
Q  224 gtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaac 278  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||    
T  32378403 gtggagtataatgagtgcaaaaggtggcacaatataataaagacaaatgcaaaac 32378457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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