View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_34 (Length: 385)
Name: NF3470_high_34
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 44739682 - 44739966
Alignment:
| Q |
18 |
actttttgaggcaaccataccaatgtcataggaccatacataaacttgttaaccatgctttttaatctcccactctcccgtgcctatttacagtgaccat |
117 |
Q |
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| T |
44739682 |
actttttgaggcaaccataccaatgtcataggaccatacataaacttgttaaccatgctttttaatctcccactctcccgtgcctatttacagtgaccat |
44739781 |
T |
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| Q |
118 |
tattccattccattccaacaaccaatgccttttctctgtctgcttatgattattgtttcattccagtttttgtttcgaaattgcaaatcatcacttcttg |
217 |
Q |
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| T |
44739782 |
tattccattccattccaacaaccaatgccttttctctgtctgcttatgattattgtttcattccagtttttgtttcgaaattgcaaatcatcacttcttg |
44739881 |
T |
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| Q |
218 |
tcttattggaccttaaagtttaattatttaactctgatcattttcaaataattaacaaaagctacaatgagtttgttaggttatg |
302 |
Q |
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| T |
44739882 |
tcttattggaccttaaagtttcattatttaactctgatcattttcaaataattaacaaaagctacaatgagtttgttaggttatg |
44739966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 297 - 376
Target Start/End: Original strand, 44739995 - 44740074
Alignment:
| Q |
297 |
gttatgagtgtgtttggaatgagtgatttaggagctagagatggtgaagaaagaaagaaagggaaaaaataaatgatgat |
376 |
Q |
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| T |
44739995 |
gttacgagtctgtttggaatgagtgatttaggagctagagatggtgaagaaagaaagaaagggaaaaaataaatgatgat |
44740074 |
T |
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