View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3470_high_35 (Length: 383)

Name: NF3470_high_35
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3470_high_35
NF3470_high_35
[»] chr3 (3 HSPs)
chr3 (1-130)||(6507719-6507848)
chr3 (222-330)||(6508856-6508964)
chr3 (335-383)||(6509016-6509064)
[»] scaffold0566 (2 HSPs)
scaffold0566 (2-130)||(10242-10370)
scaffold0566 (247-330)||(9439-9522)
[»] chr4 (2 HSPs)
chr4 (2-130)||(50379009-50379137)
chr4 (222-315)||(50380123-50380216)
[»] chr6 (2 HSPs)
chr6 (1-130)||(31571063-31571193)
chr6 (222-330)||(31573521-31573629)
[»] chr8 (2 HSPs)
chr8 (224-330)||(44969242-44969348)
chr8 (335-383)||(44969389-44969437)
[»] chr5 (2 HSPs)
chr5 (224-330)||(35331011-35331117)
chr5 (335-383)||(35331158-35331206)
[»] chr7 (2 HSPs)
chr7 (17-130)||(1968027-1968140)
chr7 (222-316)||(1969140-1969234)
[»] scaffold0281 (1 HSPs)
scaffold0281 (13-45)||(10369-10401)
[»] chr2 (1 HSPs)
chr2 (13-45)||(31860886-31860918)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 6507719 - 6507848
Alignment:
Q  1 aaaattaaaaatatttaacaatataattgaagaatatgaaactccatttaaacgtggtactgaggatattggtatgagatgatttcttttcgatgaaaga 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  6507719 aaaattaaaaatatttaacaatataattaaagaatatgaaactccatttagacgtggtgctgaggatattggtatgagatgatttctttttgatgaaaga 6507818  T
Q  101 gtaaaaacctgtaatagaaaatcaaaagga 130  Q
    ||||||||||||||||||||||||||||||    
T  6507819 gtaaaaacctgtaatagaaaatcaaaagga 6507848  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 222 - 330
Target Start/End: Original strand, 6508856 - 6508964
Alignment:
Q  222 tgtggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagttttagtacccttaaaaactacaaaggccaaaacacaaaagtc 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||||||    
T  6508856 tgtggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagttttagtacctttaaaaactacaaaagctagaacacaaaagtc 6508955  T
Q  322 tgttgcaaa 330  Q
    |||||||||    
T  6508956 tgttgcaaa 6508964  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 6509016 - 6509064
Alignment:
Q  335 tttgacaaaatagatatcaccacacaccgagttaggttgttgctttttt 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6509016 tttgacaaaatagatatcaccacacaccgagttaggttgttgctttttt 6509064  T

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Target: scaffold0566 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 10370 - 10242
Alignment:
Q  2 aaattaaaaatatttaacaatataattgaagaatatgaaactccatttaaacgtggtactgaggatattggtatgagatgatttcttttcgatgaaagag 101  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||  |||| ||||||||||||||||||||||||| ||||||||||    
T  10370 aaattaaaaatattttacaatataattgaagaatatgaaactccatttagacgtggtgttgagaatattggtatgagatgatttctttttgatgaaagag 10271  T
Q  102 taaaaacctgtaatagaaaatcaaaagga 130  Q
    |||||||||||||||||||||||||||||    
T  10270 taaaaacctgtaatagaaaatcaaaagga 10242  T

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Target: scaffold0566; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 9522 - 9439
Alignment:
Q  247 aaattaatatgaacaaaagaaatataattcagttttagtacccttaaaaactacaaaggccaaaacacaaaagtctgttgcaaa 330  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  9522 aaattagtatgaacaaaaaaaatataattcagttttagtacccttaaaaactacaaaagccaaaacacaaaagtttgttgcaaa 9439  T

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Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 50379009 - 50379137
Alignment:
Q  2 aaattaaaaatatttaacaatataattgaagaatatgaaactccatttaaacgtggtactgaggatattggtatgagatgatttcttttcgatgaaagag 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| |||    
T  50379009 aaattaaaaatatttaacaatatatttgaagaatatgaaactccatttagacgtggtgctgaggatattggtatgagatgatttctttttgatgaatgag 50379108  T
Q  102 taaaaacctgtaatagaaaatcaaaagga 130  Q
    ||||||| ||||||||| |||||||||||    
T  50379109 taaaaacttgtaatagacaatcaaaagga 50379137  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 222 - 315
Target Start/End: Original strand, 50380123 - 50380216
Alignment:
Q  222 tgtggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagttttagtacccttaaaaactacaaaggccaaaacaca 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||| | |||||||||    
T  50380123 tgtggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagtttttttaccctcaaaaactacaaaagtcaaaacaca 50380216  T

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Target: chr6 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 31571063 - 31571193
Alignment:
Q  1 aaaattaaaaatatttaacaatataattgaagaatatgaaactccatttaaacgtggtactgaggatattggtatgagatgatttcttttcgatgaaaga 100  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  31571063 aaaattaaaaatattcaacaatataattgaagaatatgagactccatttagacgtggtgctgaggatattggtatgagatgatttctttttgatgaaaga 31571162  T
Q  101 gt-aaaaacctgtaatagaaaatcaaaagga 130  Q
    || |||||||||||||||||||| |||||||    
T  31571163 gtaaaaaacctgtaatagaaaattaaaagga 31571193  T

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Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 222 - 330
Target Start/End: Original strand, 31573521 - 31573629
Alignment:
Q  222 tgtggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagttttagtacccttaaaaactacaaaggccaaaacacaaaagtc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | || ||||||||||||    
T  31573521 tgtggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataatttagttttagtacccttaaaaactacaaaaggcagaacacaaaagtc 31573620  T
Q  322 tgttgcaaa 330  Q
    | |||||||    
T  31573621 tattgcaaa 31573629  T

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Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 224 - 330
Target Start/End: Original strand, 44969242 - 44969348
Alignment:
Q  224 tggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagttttagtacccttaaaaactacaaaggccaaaacacaaaagtctg 323  Q
    |||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44969242 tggatcgagtaaaaattagtataaaattaatataatcaaaagaaatataattcagttttagtacccttaaaaactacaaaagccaaaacacaaaagtctg 44969341  T
Q  324 ttgcaaa 330  Q
    |||||||    
T  44969342 ttgcaaa 44969348  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 44969389 - 44969437
Alignment:
Q  335 tttgacaaaatagatatcaccacacaccgagttaggttgttgctttttt 383  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44969389 tttgacaaaatagatatcaccacacaccgagttaggttgtcgctttttt 44969437  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 224 - 330
Target Start/End: Original strand, 35331011 - 35331117
Alignment:
Q  224 tggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagttttagtacccttaaaaactacaaaggccaaaacacaaaagtctg 323  Q
    |||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  35331011 tggatcgagtaaaaattagtataaaattaatataatcaaaagaaatataattcagttttaatacccttaaaaactacaaaagccaaaacacaaaagtctg 35331110  T
Q  324 ttgcaaa 330  Q
    |||||||    
T  35331111 ttgcaaa 35331117  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 35331158 - 35331206
Alignment:
Q  335 tttgacaaaatagatatcaccacacaccgagttaggttgttgctttttt 383  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35331158 tttgacaaaatagatatcaccacacaccgagttaggttgtcgctttttt 35331206  T

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Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 1968027 - 1968140
Alignment:
Q  17 aacaatataattgaagaatatgaaactccatttaaacgtggtactgaggatattggtatgagatgatttcttttcgatgaaagagtaaaaacctgtaata 116  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| | |||||    
T  1968027 aacaatatatttgaagaatatgaaactccatttagacgtggtgctgaggatattggtatgagatgatttctttttgatgaatgagtaaaaacttataata 1968126  T
Q  117 gaaaatcaaaagga 130  Q
    ||||||||||||||    
T  1968127 gaaaatcaaaagga 1968140  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 222 - 316
Target Start/End: Original strand, 1969140 - 1969234
Alignment:
Q  222 tgtggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagttttagtacccttaaaaactacaaaggccaaaacacaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | ||||||||||    
T  1969140 tgtggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagtttttgtaccctcaaaaactacaaaagtcaaaacacaa 1969234  T

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Target: scaffold0281 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 10401 - 10369
Alignment:
Q  13 atttaacaatataattgaagaatatgaaactcc 45  Q
    ||||||||||||||||||||||||| |||||||    
T  10401 atttaacaatataattgaagaatatcaaactcc 10369  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 31860918 - 31860886
Alignment:
Q  13 atttaacaatataattgaagaatatgaaactcc 45  Q
    ||||||||||||||||||||||||| |||||||    
T  31860918 atttaacaatataattgaagaatatcaaactcc 31860886  T

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