View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_36 (Length: 379)
Name: NF3470_high_36
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 375
Target Start/End: Original strand, 34069039 - 34069397
Alignment:
| Q |
17 |
aaatatattttgtttataaacaaaaacgttaaaatccctccaccgcatgaagttgaaggcttgaagcacatttgtgggaagtggtaacgaactcgaagca |
116 |
Q |
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| T |
34069039 |
aaatatattttgtttataaacaaaaacgttaaaatccctccaccgcatgaagttgaaggcttgaagcacatttgtgggaagtggtaacaaactcgaagca |
34069138 |
T |
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| Q |
117 |
agtcaatttctatcaataaaatagatactacaatgaacacgataaaataaagcatttacagaataatattatatatcctgtgcagtgtgtaccatttata |
216 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34069139 |
agtcaatttctaacaataaaatagatactacaatgaacacgataaaataaggcatttacagaataatattatatatcctgtgcagtgtgtaccatttata |
34069238 |
T |
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| Q |
217 |
tggtattcaaccctgcaactgcatgaatctcagggtattctagaaagcctattatctttacaaacgaatgttgtaatcaatacaacttactttgacaagg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34069239 |
tggtattcaaccctgcaactgcatgaatctcagggtattctagaaagcctattatctttacaaacgaatgttgtaatcaatacaacttactttgacaagg |
34069338 |
T |
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| Q |
317 |
aactcgtcaagaacaatgaaatggaaaggaaactgttaaaactcatgtctctgctcctc |
375 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34069339 |
aactcatcaagaacaatgaaatggaaaggaaactgttaaaactcatgtcttggctcctc |
34069397 |
T |
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