View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_38 (Length: 378)
Name: NF3470_high_38
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 37749272 - 37749632
Alignment:
| Q |
1 |
gctgtgatagatgagtgggcaccaaaagtagatgggattgggaatgaaatcattggagaaaatttagactagttccaattgtaagatagcagtgtcttgt |
100 |
Q |
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| T |
37749272 |
gctgtgatagatgagtgggcaccaaaagtagatgggattgggaatgaaatcattggagaaaatttagactagttccaattgtaagatagcagtgtcttgt |
37749371 |
T |
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| Q |
101 |
cttaagcaaataggacatatatggataataacgataggaacttcacatggagggtagacaaatgaaagagagtctagagctagaagtattgggacatgta |
200 |
Q |
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| T |
37749372 |
cttaagcaaataggacatatatggataataacgataggaacttcacatggagggtagacaaatgaaagagagtccagagctagaagtattgggacatgta |
37749471 |
T |
|
| Q |
201 |
tggagaataaccataggaacatcataaggaggatagacaagatgaaagatattccaatgctagaagtaatgggagactaaggaaaatgtaaaccaaatca |
300 |
Q |
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| T |
37749472 |
tggagaataaccataggaacatcataaggaggatagacaagatgaaagatattccaatgctagaagtaatgggagactaaggaaaatgtaaaccaaatca |
37749571 |
T |
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| Q |
301 |
ttacaagagatatggagcatagttattaggttcccacgatacatgtgaatgagttgtatct |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37749572 |
ttacaagagatatggagcatagttattaggttcccacgatacatgtgaatgagtcgtatct |
37749632 |
T |
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