View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3470_high_4 (Length: 647)
Name: NF3470_high_4
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 9 - 605
Target Start/End: Complemental strand, 1702342 - 1701746
Alignment:
| Q |
9 |
agcagagatatccaaagactccaagattaagataattaggagtggaaccaaacagaatttcattaggacatttgtttttaagatgtgttgttgtcatgcg |
108 |
Q |
| |
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|||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
1702342 |
agcacagacatccaaagactcgaagattaagataattaggagtggaaccaaacagaatttcatgaggacatttgtttttaagatgtgttgttggcatgcg |
1702243 |
T |
|
| Q |
109 |
atttattaaatacaccgccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacga |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1702242 |
atttattaaatacaccgccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacga |
1702143 |
T |
|
| Q |
209 |
tgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggcttgagttttatgtatt |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1702142 |
tgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatagtgagatataccatgagagttaagatatggcttgagttttatgtatt |
1702043 |
T |
|
| Q |
309 |
cagtgccaccatcggtgtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagtaacaacatcagttttact |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1702042 |
cagtgccaccatcggtgtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagtaacaacatcagttttact |
1701943 |
T |
|
| Q |
409 |
ttttaacagataaatccaagaatattgagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaaca |
508 |
Q |
| |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
1701942 |
ttttaacggataaatccaagaatatcgagtaaaatgatcaacaaacacaagataatatttgtaaccatgaactgaagtgataggagagggtccccaaaca |
1701843 |
T |
|
| Q |
509 |
tcagaaaataacagttcaagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatgaa |
605 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1701842 |
tcagaaaataacagttcaagaggagctgtggttttgatagaagaaacagaaaaaggaagcttatgacttttattaatatggcaagaattacaatgaa |
1701746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 490 - 629
Target Start/End: Complemental strand, 181434 - 181295
Alignment:
| Q |
490 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatga |
589 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
181434 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctgcggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatga |
181335 |
T |
|
| Q |
590 |
caagaattacaatgaannnnnnnattttctaagttcctaa |
629 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |
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|
| T |
181334 |
caagaattacaatgaaattttttattttctaagttcctaa |
181295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 125 - 603
Target Start/End: Complemental strand, 5400962 - 5400484
Alignment:
| Q |
125 |
gccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaa |
224 |
Q |
| |
|
|||||||| || ||||||||||||||| |||| || ||| ||||||||| | || ||||| | |||||||||||||| || ||||||||||| |||| |
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| T |
5400962 |
gccatttgaaaagcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaa |
5400863 |
T |
|
| Q |
225 |
taccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggcttgagttttatgtattcagtgccaccatcggt |
324 |
Q |
| |
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| ||||| ||||| ||||| || |||||||| || | || ||||| ||||| | || | ||||||||||||||| | ||||||||| |||||||| || |
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|
| T |
5400862 |
tgccaatgtgttcaggagtataaggtgggctaatgtaatgggatattccatgtgtattgaaatatggcttgagtttaaagtattcagttccaccatcagt |
5400763 |
T |
|
| Q |
325 |
gtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagtaacaacatcagttttactttttaacagataaatc |
424 |
Q |
| |
|
||| | ||||| ||||||| || || | |||||| ||| |||||||| | |||||||| || | ||||||||||| |||| | |||||||| |
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|
| T |
5400762 |
gtaaatagatttgactttgtgggagaaaaagttttcaattttagaatgaaattgaggaaatatgatagctacatcagttttgtttttaagtggataaatc |
5400663 |
T |
|
| Q |
425 |
caagaatattgagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagtt |
524 |
Q |
| |
|
|| | || |||| ||||| |||||||| ||||||||||| |||||||||||| || || ||||| || ||||||||||||||||| || | |||| |
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| T |
5400662 |
cacgtgtagcgagtgaaatggtcaacaaagacaagataatacctgtaaccattaatggacgttataggggatggtccccaaacatcagagaaaatgagtt |
5400563 |
T |
|
| Q |
525 |
caagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatg |
603 |
Q |
| |
|
||| |||| | |||| || ||||| | ||||||||||| |||||||||||||||||| || ||||||||||| |
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|
| T |
5400562 |
caaatggagagaaagtttgtattgaagatatagaaaaaggaagtttatgacttttattaatagagcaggaattacaatg |
5400484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 125 - 603
Target Start/End: Complemental strand, 3541937 - 3541459
Alignment:
| Q |
125 |
gccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaa |
224 |
Q |
| |
|
|||||||| || ||||||||||||||| |||| || ||| ||||||||| | || ||||| | |||||||||||||| || ||||||||||| |||| |
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|
| T |
3541937 |
gccatttgaaaagcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaa |
3541838 |
T |
|
| Q |
225 |
taccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggcttgagttttatgtattcagtgccaccatcggt |
324 |
Q |
| |
|
| ||||| ||||| ||||| || |||||||| || | || ||||| ||||| | || | ||||||||||||||| | ||||||||| |||||||| || |
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|
| T |
3541837 |
tgccaatgtgttcaggagtataaggtgggctaatgtaatgggatattccatgtgtattgaaatatggcttgagtttaaagtattcagttccaccatcagt |
3541738 |
T |
|
| Q |
325 |
gtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagtaacaacatcagttttactttttaacagataaatc |
424 |
Q |
| |
|
||| | ||||| ||||||| || || | |||||| ||| |||||||| | |||||||| || | ||||||||||| |||| | |||||||| |
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|
| T |
3541737 |
gtaaatagatttgactttgtgggagaaaaagttttcaattttagaatgaaattgaggaaatatgatagctacatcagttttgtttttaagtggataaatc |
3541638 |
T |
|
| Q |
425 |
caagaatattgagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagtt |
524 |
Q |
| |
|
|| | || |||| ||||| |||||||| ||||||||||| ||||||||||| | || || ||||| || ||||||||||||||||| || | |||| |
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|
| T |
3541637 |
cacgtgtagcgagtgaaatggtcaacaaagacaagataatacttgtaaccattgatggacgttataggggatggtccccaaacatcagagaaaatgagtt |
3541538 |
T |
|
| Q |
525 |
caagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatg |
603 |
Q |
| |
|
||| |||| | |||| || ||||| | ||||||||||| |||||||||||||||||| || ||||||||||| |
|
|
| T |
3541537 |
caaatggagagaaagtttgtattgaagatatagaaaaaggaagtttatgacttttattaatagagcaggaattacaatg |
3541459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 532
Target Start/End: Complemental strand, 31098935 - 31098805
Alignment:
| Q |
402 |
ttttactttttaacagataaatccaagaatattgagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtcc |
501 |
Q |
| |
|
|||||||||||| |||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||| | | | | || ||||| |||| |
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|
| T |
31098935 |
ttttactttttaggggataaatccatttatatctagtaaaatgatcaacgaacacaagataatatttgtatccactgatagtgttaattggagagggtct |
31098836 |
T |
|
| Q |
502 |
ccaaacatcagaaaataacagttcaagagga |
532 |
Q |
| |
|
||||||||||||||| | |||||||||||| |
|
|
| T |
31098835 |
ccaaacatcagaaaaaatgagttcaagagga |
31098805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 191 - 513
Target Start/End: Original strand, 26592278 - 26592600
Alignment:
| Q |
191 |
gtttctactatatgacgatgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatg |
290 |
Q |
| |
|
||||| |||||||| | |||||||||||||||||| ||||||||||| |||||||| ||||| || || | || ||||| ||||| | || | ||| | |
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|
| T |
26592278 |
gtttcgactatatggcaatgtttgcgttctgcaatgccaatatgttcaggagtgtaaggtggacttatgtaatgtgatattccatgtgtattgaaataag |
26592377 |
T |
|
| Q |
291 |
gcttgagttttatgtattcagtgccaccatcggtgtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagt |
390 |
Q |
| |
|
||||||| || |||||||| |||||||| ||||| | ||||| || |||| || || | | |||||| ||| | |||||| | ||| || || | |
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|
| T |
26592378 |
atttgagttagatatattcagttccaccatctgtgtaaattgattttaccttgttggagaaaagattttcaattttagtatgaaattgtgggaagatggc |
26592477 |
T |
|
| Q |
391 |
aacaacatcagttttactttttaacagataaatccaagaatattgagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgata |
490 |
Q |
| |
|
|| |||| |||||| ||| | | |||||||||| | |||| |||||| || ||||||||||||||||| ||| | |||||||||| || || ||| |
|
|
| T |
26592478 |
tactacattagttttgcttctaagaggataaatccatgtatatctagtaaagtggtcaacaaacacaagatagtatctataaccattaatggatgttata |
26592577 |
T |
|
| Q |
491 |
ggagaaggtccccaaacatcaga |
513 |
Q |
| |
|
|| || ||||||||||||||||| |
|
|
| T |
26592578 |
ggggatggtccccaaacatcaga |
26592600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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