View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_40 (Length: 374)
Name: NF3470_high_40
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 55383750 - 55384091
Alignment:
| Q |
18 |
acacattccttctgcacagaagagaaatggaaatatctcttcctttgattcttcttgccactgtggttattatggctatgccactttcatttggtgtaaa |
117 |
Q |
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| T |
55383750 |
acacattccttctgcacagaagagaaatggaaatatctcttcctttgattcttctttccactgtggttattatggctatgccactttcatttggtgtaaa |
55383849 |
T |
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| Q |
118 |
aggaaaccaactttcttacaactactacaagaattcttgtccaaacttggaaagtttggtcgagagagaattgatgagcgtattcatgacagatattcgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55383850 |
aggaaaccaactttcttacaactactacaagaattcttgtccaaacttggaaagtttggtcgagagagaattgatgagcgtattcatgacagatattcgt |
55383949 |
T |
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| Q |
218 |
gcaccatcagcatttctaaggctcatgtttcatgattgccaagttcaggtaattcctagataggtgttttttatgtcgttcaaggttgcttggacctcac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55383950 |
gcaccatcagcatttctaaggctcatgtttcatgattgccaagttcaggtaattcctagataggtgttttttatgtcgttcaaggttgcttggacctcac |
55384049 |
T |
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| Q |
318 |
tttgtttgtattaatttgcatgcagggatgtgatgcctcgat |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
55384050 |
tttgtttgtattaatttgcatgcagggatgtgatgcctcgat |
55384091 |
T |
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