View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3470_high_41 (Length: 371)

Name: NF3470_high_41
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3470_high_41
NF3470_high_41
[»] chr8 (7 HSPs)
chr8 (81-339)||(6013365-6013623)
chr8 (18-78)||(28694071-28694131)
chr8 (24-78)||(12206723-12206777)
chr8 (24-78)||(12451151-12451205)
chr8 (19-76)||(39513209-39513266)
chr8 (18-78)||(13782228-13782288)
chr8 (22-78)||(22550885-22550941)
[»] chr1 (7 HSPs)
chr1 (85-339)||(37422790-37423051)
chr1 (21-78)||(47653727-47653781)
chr1 (19-68)||(2425715-2425764)
chr1 (22-78)||(13636142-13636199)
chr1 (19-78)||(28456741-28456797)
chr1 (22-78)||(19161889-19161945)
chr1 (19-77)||(26607456-26607511)
[»] chr6 (7 HSPs)
chr6 (86-170)||(28976154-28976239)
chr6 (19-78)||(117255-117311)
chr6 (22-78)||(6204823-6204880)
chr6 (22-78)||(22305104-22305161)
chr6 (22-78)||(9048072-9048128)
chr6 (22-78)||(15888820-15888876)
chr6 (22-78)||(26349972-26350027)
[»] chr5 (6 HSPs)
chr5 (22-79)||(18512671-18512728)
chr5 (22-73)||(18512228-18512279)
chr5 (19-80)||(8539534-8539595)
chr5 (22-78)||(30192489-30192545)
chr5 (22-78)||(19037490-19037547)
chr5 (20-80)||(11348493-11348553)
[»] chr4 (12 HSPs)
chr4 (18-78)||(20208503-20208563)
chr4 (19-78)||(18884524-18884583)
chr4 (18-78)||(51037488-51037548)
chr4 (27-75)||(51429326-51429374)
chr4 (19-78)||(16984181-16984240)
chr4 (22-78)||(6178130-6178187)
chr4 (22-78)||(21018024-21018081)
chr4 (22-78)||(41795376-41795433)
chr4 (22-78)||(49094080-49094137)
chr4 (22-78)||(55793916-55793973)
chr4 (85-155)||(19130306-19130377)
chr4 (22-78)||(50447005-50447061)
[»] scaffold0101 (1 HSPs)
scaffold0101 (22-78)||(36554-36611)
[»] chr2 (10 HSPs)
chr2 (19-76)||(37322133-37322190)
chr2 (22-78)||(29406969-29407025)
chr2 (19-78)||(7189971-7190030)
chr2 (19-78)||(40156393-40156452)
chr2 (22-78)||(17424128-17424185)
chr2 (15-78)||(38779663-38779723)
chr2 (20-77)||(43976847-43976904)
chr2 (22-78)||(23346777-23346833)
chr2 (18-78)||(30803038-30803098)
chr2 (50-78)||(43491134-43491162)
[»] chr3 (13 HSPs)
chr3 (22-78)||(2062383-2062439)
chr3 (19-78)||(600564-600623)
chr3 (19-78)||(48246406-48246465)
chr3 (19-78)||(50998700-50998759)
chr3 (19-78)||(55385131-55385190)
chr3 (20-77)||(596779-596836)
chr3 (22-78)||(2647719-2647776)
chr3 (15-78)||(42148285-42148345)
chr3 (22-78)||(54389791-54389848)
chr3 (19-78)||(29918361-29918420)
chr3 (19-78)||(29967514-29967573)
chr3 (18-78)||(34543156-34543216)
chr3 (19-78)||(43476185-43476245)
[»] chr7 (2 HSPs)
chr7 (19-72)||(7974933-7974986)
chr7 (15-78)||(29097880-29097940)
[»] scaffold0065 (1 HSPs)
scaffold0065 (22-78)||(65315-65371)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 81 - 339
Target Start/End: Complemental strand, 6013623 - 6013365
Alignment:
Q  81 aaaagaagaacataatcttatcatgcactctctacactgaattttttatcctatcttccctaaccattctctctcatctctcacccaccaaaggaagcca 180  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6013623 aaaagaagaacatattcttatcatgcactctctacactgaattttttatcctatcttccctaaccattctctctcatctctcacccaccaaaggaagaca 6013524  T
Q  181 aattcactgtttatttttgtttcggtgacactacagttttaagttgcttcaaattgcaatgggtcttgaatcctatgagattctattcatatgggtatca 280  Q
    |||||| ||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||| |    
T  6013523 aattcaatgtttatttttgtttcgataacactacagttttaagtggcttcaaattgcaatgggtcttaaatcctatgaggttctattcatatgggtataa 6013424  T
Q  281 aaaattccttatgcttgtagctttaacatttcaactcaacaatattttaacaatctagc 339  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6013423 aaaattccttatacttgtagctttaacatttcaactcaacaatattttaacaatctagc 6013365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 28694071 - 28694131
Alignment:
Q  18 tccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||||    
T  28694071 tccctcggcagttaactgccgaagtttagtaaaaccggctgcagttaactgccgaggaaaa 28694131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 12206723 - 12206777
Alignment:
Q  24 ggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||| ||| |||||||||| |||| ||||| |||||||||||    
T  12206723 ggcagttaactgccgaagtttagtaaaaccgggtgcagttaaccgtcgaggaaaa 12206777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 12451151 - 12451205
Alignment:
Q  24 ggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||| ||| |||||||||| |||| ||||| |||||||||||    
T  12451151 ggcagttaactgccgaagtttagtaaaaccgggtgcagttaaccgtcgaggaaaa 12451205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 39513266 - 39513209
Alignment:
Q  19 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaa 76  Q
    ||||||||||||||||  |||| |||   | |||||||||||||||||||||||||||    
T  39513266 ccctcggcagttaactatcgaaattttaaagaaccggctgcaattaactgtcgaggaa 39513209  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 13782228 - 13782288
Alignment:
Q  18 tccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    |||||||||||||||||||| || |||   | ||||| ||||||||||||| |||||||||    
T  13782228 tccctcggcagttaactgccaaaattttaaagaaccgactgcaattaactgccgaggaaaa 13782288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 22550941 - 22550885
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||| |||   ||| ||||||||| ||||||| |||||||||    
T  22550941 tcggcagttaactgccgaagttttagaaatccggctgcagttaactgccgaggaaaa 22550885  T

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Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 85 - 339
Target Start/End: Complemental strand, 37423051 - 37422790
Alignment:
Q  85 gaagaacataatcttatcatgcactctctacactgaattttttatcctatcttccctaaccattctctctcatctctc--acccaccaaaggaagccaaa 182  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  37423051 gaagaacatgttcttatcatgcactctctacactgaattttttatcctatcttccctaaccattctctctcatctctctcacccaccaaaggaagccaaa 37422952  T
Q  183 ttcactgtttatttttgtttcggtgacactacagttttaagttgcttcaaattgcaatgggtcttgaatcctatgagattctattc-----atatgggta 277  Q
    | |||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||| |||||||||||||| ||||||||     |||||||||    
T  37422951 tccactgtttatgtttgtttcggtaacactacacttttaagtggcttcaaattgcaatgggttttgaatcctatgaggttctattcatatcatatgggta 37422852  T
Q  278 tcaaaaattccttatgcttgtagctttaacatttcaactcaacaatattttaacaatctagc 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37422851 tcaaaaattccttatgcttgtagctttaacatttcaactcaacaatattttaacaatctagc 37422790  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 47653781 - 47653727
Alignment:
Q  21 ctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    |||||||||||||||||||||| |   ||||||||||||| ||||||| |||||||||    
T  47653781 ctcggcagttaactgccgaattat---aaaaccggctgcagttaactgccgaggaaaa 47653727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 2425764 - 2425715
Alignment:
Q  19 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactg 68  Q
    |||||||||||||||||||||| ||| | ||| ||||||||| |||||||    
T  2425764 ccctcggcagttaactgccgaagttttggaaatccggctgcagttaactg 2425715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 13636199 - 13636142
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaa-ccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||| ||| | |||| ||||||||| ||||||| |||||||||    
T  13636199 tcggcagttaactgccgaaattttgaaaaatccggctgcagttaactgccgaggaaaa 13636142  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 28456797 - 28456741
Alignment:
Q  19 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||||||||    || ||||||||||| |||||| ||||||||||    
T  28456797 ccctcggcagttaactgccgaatt---atagaaccggctgcagttaactatcgaggaaaa 28456741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 19161889 - 19161945
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||| |||   ||| ||||||||| ||||||| |||||||||    
T  19161889 tcggcagttaactgccgaagttttagaaatccggctgcagttaactgccgaggaaaa 19161945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 26607511 - 26607456
Alignment:
Q  19 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaa 77  Q
    |||||||||||||||||||||||| | |   ||||||||||| ||||||| ||||||||    
T  26607511 ccctcggcagttaactgccgaattatgg---aaccggctgcagttaactgccgaggaaa 26607456  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 28976239 - 28976154
Alignment:
Q  86 aagaacataatcttatcatgcactctctacactgaatttttta-tcctatcttccctaaccattctctctcatctctcacccacca 170  Q
    ||||||||  |||||||||||| ||||||| |||||||||||  | |||||||||||||| |||||||||||||||||||| ||||    
T  28976239 aagaacatgctcttatcatgcattctctacgctgaatttttttgtactatcttccctaactattctctctcatctctcacctacca 28976154  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 117255 - 117311
Alignment:
Q  19 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    |||||||||||||||||||||||| | |   ||||||||||| ||||||| |||||||||    
T  117255 ccctcggcagttaactgccgaattatgg---aaccggctgcagttaactgccgaggaaaa 117311  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 6204823 - 6204880
Alignment:
Q  22 tcggcagttaactgccg-aattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||| |||||||  ||| ||||||||| ||||||| |||||||||    
T  6204823 tcggcagttaactgccgaaattttctcaaatccggctgcagttaactgccgaggaaaa 6204880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 22305104 - 22305161
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaa-ccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||| ||| | |||| ||||||||| ||||||| |||||||||    
T  22305104 tcggcagttaactgccgaaattttgaaaaatccggctgcagttaactgccgaggaaaa 22305161  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 9048072 - 9048128
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||| |||   ||||||||||||| ||||||  |||||||||    
T  9048072 tcggcagttaactgccgaagtttgaaaaaaccggctgcagttaactaccgaggaaaa 9048128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 15888876 - 15888820
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||| ||||| |||   ||||||||||||| ||||||| |||||||||    
T  15888876 tcggcagttaactaccgaagttttagaaaaccggctgcagttaactgccgaggaaaa 15888820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 26349972 - 26350027
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||| ||| || |||||||| ||| ||||||| |||||||||    
T  26349972 tcggcagttaactgccgaagtttagt-aaaccggcggcagttaactgccgaggaaaa 26350027  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 18512728 - 18512671
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaat 79  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||||||    
T  18512728 tcggcagttaactgccgaagtttagtaaaaccggctgcagttaactgccgaggaaaat 18512671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 18512228 - 18512279
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgag 73  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||||||| ||||    
T  18512228 tcggcagttaactgccgaagtttagtaaaaccggctgcagttaactgccgag 18512279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 8539595 - 8539534
Alignment:
Q  19 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaatg 80  Q
    |||||||||||||||||||||| |||   ||| ||||||||| ||||||| |||||||||||    
T  8539595 ccctcggcagttaactgccgaagttttagaaatccggctgcagttaactgccgaggaaaatg 8539534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 30192489 - 30192545
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||| |||   | ||||||||||| |||||||||||||||||    
T  30192489 tcggcagttaactgccgaaattttaaagaaccggctgcagttaactgtcgaggaaaa 30192545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 19037547 - 19037490
Alignment:
Q  22 tcggcagttaactgccg-aattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||| |||||||  ||| ||||||||| ||||||| |||||||||    
T  19037547 tcggcagttaactgccgaaattttctcaaatccggctgcagttaactgccgaggaaaa 19037490  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 11348553 - 11348493
Alignment:
Q  20 cctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaatg 80  Q
    ||||||||||||||||||||| |||   ||| |||| |||| ||||||| |||||||||||    
T  11348553 cctcggcagttaactgccgaagttttagaaatccggatgcagttaactgccgaggaaaatg 11348493  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 20208503 - 20208563
Alignment:
Q  18 tccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||||||| |||  || ||||||||||| ||||||| |||||||||    
T  20208503 tccctcggcagttaactgccgaagtttactagaaccggctgcagttaactgccgaggaaaa 20208563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 18884583 - 18884524
Alignment:
Q  19 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    |||||||||||||||||||||| ||| | ||||||||||||| ||||||| |||| ||||    
T  18884583 ccctcggcagttaactgccgaaattttgaaaaaccggctgcagttaactgccgagaaaaa 18884524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 51037548 - 51037488
Alignment:
Q  18 tccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||||||| |||   |||  |||||||||||||||| |||||||||    
T  51037548 tccctcggcagttaactgccgaagttttagaaatacggctgcaattaactgccgaggaaaa 51037488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 51429374 - 51429326
Alignment:
Q  27 agttaactgccgaattttcgtaaaaccggctgcaattaactgtcgagga 75  Q
    |||||||||||||||||| |  |||||||||||| ||||||||||||||    
T  51429374 agttaactgccgaattttggagaaaccggctgcagttaactgtcgagga 51429326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 16984240 - 16984181
Alignment:
Q  19 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    |||||||||||||||||||||| |||   ||| ||||||||| ||||||| |||||||||    
T  16984240 ccctcggcagttaactgccgaagttttagaaatccggctgcagttaactgccgaggaaaa 16984181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 6178187 - 6178130
Alignment:
Q  22 tcggcagttaactgccg-aattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||| |||||||  ||| ||||||||| ||||||| |||||||||    
T  6178187 tcggcagttaactgccgaaattttctcaaatccggctgcagttaactgccgaggaaaa 6178130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 21018081 - 21018024
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaa-ccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||| ||| ||| | |||| ||||||||||||||||| |||||||||    
T  21018081 tcggcagttaactgctgaaattttgaaaaatccggctgcaattaactgccgaggaaaa 21018024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 41795433 - 41795376
Alignment:
Q  22 tcggcagttaactgccg-aattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||| |||||||  ||| ||||||||| ||||||| |||||||||    
T  41795433 tcggcagttaactgccgaaattttctcaaatccggctgcagttaactgccgaggaaaa 41795376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 49094080 - 49094137
Alignment:
Q  22 tcggcagttaactgccg-aattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||| |||||||  ||| ||||||||| ||||||| |||||||||    
T  49094080 tcggcagttaactgccgaaattttctcaaatccggctgcagttaactgccgaggaaaa 49094137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 55793916 - 55793973
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaa-ccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||| ||| | |||| ||||||||| ||||||| |||||||||    
T  55793916 tcggcagttaactgccgaaattttgaaaaatccggctgcagttaactgccgaggaaaa 55793973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 19130377 - 19130306
Alignment:
Q  85 gaagaacataatcttatcatgcactctcta-cactgaattttttatc-ctatcttccctaaccattctctctc 155  Q
    |||||||| ||||||||||||| | ||||| ||||||||||||| || || ||||||| ||||||||||||||    
T  19130377 gaagaacacaatcttatcatgctc-ctctaacactgaattttttctcactttcttccccaaccattctctctc 19130306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 50447005 - 50447061
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||| |||   |||  |||||||| |||||||||||||||||    
T  50447005 tcggcagttaactgccgaagttttaaaaatacggctgcagttaactgtcgaggaaaa 50447061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 36611 - 36554
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaa-ccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||| ||| | |||| ||||||||||||||||| |||||||||    
T  36611 tcggcagttaactgccgaaattttgaaaaatccggctgcaattaactgccgaggaaaa 36554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 37322190 - 37322133
Alignment:
Q  19 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaa 76  Q
    |||||||||||||||||||||| ||| | | ||||||||||| ||||||| |||||||    
T  37322190 ccctcggcagttaactgccgaaattttgaagaaccggctgcagttaactgccgaggaa 37322133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 29406969 - 29407025
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||| |||   | ||||||||||||||||||| |||||||||    
T  29406969 tcggcagttaactgccgaaattttaaagaaccggctgcaattaactgccgaggaaaa 29407025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 7190030 - 7189971
Alignment:
Q  19 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    |||||||||||||||||||||| |||   ||| ||||||||| ||||||| |||||||||    
T  7190030 ccctcggcagttaactgccgaagttttagaaatccggctgcagttaactgccgaggaaaa 7189971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 40156393 - 40156452
Alignment:
Q  19 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    |||||| ||||||| ||||||| ||| | ||||||||||||| ||||||| |||||||||    
T  40156393 ccctcgacagttaattgccgaaattttgaaaaaccggctgcagttaactgacgaggaaaa 40156452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 17424128 - 17424185
Alignment:
Q  22 tcggcagttaactgccg-aattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||| |||||| | ||| ||||||||| ||||||| |||||||||    
T  17424128 tcggcagttaactgccgaaattttggaaaatccggctgcagttaactgccgaggaaaa 17424185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 38779723 - 38779663
Alignment:
Q  15 atatccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    |||||||||||||||||||||||||||| | |   ||||||||||| ||||||  |||||||||    
T  38779723 atatccctcggcagttaactgccgaattatgg---aaccggctgcagttaactcccgaggaaaa 38779663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 43976847 - 43976904
Alignment:
Q  20 cctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaa 77  Q
    ||||||||||||||||||||| |||   ||||||||||| | ||||||| ||||||||    
T  43976847 cctcggcagttaactgccgaaattttaaaaaaccggctgtagttaactgccgaggaaa 43976904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 23346777 - 23346833
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||| |||  |||| ||||||||| ||||||| | |||||||    
T  23346777 tcggcagttaactgccgaagttttataaatccggctgcagttaactgccaaggaaaa 23346833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 30803098 - 30803038
Alignment:
Q  18 tccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||||||| |||   |||  |||||||| ||||||| |||||||||    
T  30803098 tccctcggcagttaactgccgaagttttagaaatacggctgcagttaactgccgaggaaaa 30803038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 43491134 - 43491162
Alignment:
Q  50 aaccggctgcaattaactgtcgaggaaaa 78  Q
    |||||||||||||||||||||||||||||    
T  43491134 aaccggctgcaattaactgtcgaggaaaa 43491162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 2062383 - 2062439
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||| |||   ||||| ||||||| |||||||||||||||||    
T  2062383 tcggcagttaactgccgaagttttagaaaactggctgcagttaactgtcgaggaaaa 2062439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 600623 - 600564
Alignment:
Q  19 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    |||||| ||||||||||||||| ||| | ||| ||||| ||| |||||||||||||||||    
T  600623 ccctcgacagttaactgccgaagttttggaaatccggccgcagttaactgtcgaggaaaa 600564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 48246406 - 48246465
Alignment:
Q  19 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    |||||||||||||||||| ||| |||   ||| ||||||||| |||||||||||||||||    
T  48246406 ccctcggcagttaactgctgaagttttagaaatccggctgcagttaactgtcgaggaaaa 48246465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 50998759 - 50998700
Alignment:
Q  19 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    |||||||||||||||||||||| |||  |||| ||||||||| ||||||| ||| |||||    
T  50998759 ccctcggcagttaactgccgaagttttataaatccggctgcagttaactgccgaagaaaa 50998700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 55385131 - 55385190
Alignment:
Q  19 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    |||||||||||||||||||||| |||   ||| ||||||||| ||||||| |||||||||    
T  55385131 ccctcggcagttaactgccgaagttttagaaatccggctgcagttaactgccgaggaaaa 55385190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 596779 - 596836
Alignment:
Q  20 cctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaa 77  Q
    |||||||| |||||||||||| ||| |||||  |||||||| ||||||| ||||||||    
T  596779 cctcggcaattaactgccgaagttttgtaaattcggctgcagttaactgccgaggaaa 596836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 2647776 - 2647719
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaa-ccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||| ||| | |||| ||||||||| ||||||| |||||||||    
T  2647776 tcggcagttaactgccgaaattttgaaaaatccggctgcagttaactgccgaggaaaa 2647719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 42148285 - 42148345
Alignment:
Q  15 atatccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    |||| ||||||||||||||||||||||| | |   ||||||||||| |||||| ||||||||||    
T  42148285 atattcctcggcagttaactgccgaattatgg---aaccggctgcagttaactatcgaggaaaa 42148345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 54389791 - 54389848
Alignment:
Q  22 tcggcagttaactgccg-aattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||| |||||||  ||| ||||||||| ||||||| |||||||||    
T  54389791 tcggcagttaactgccgaaattttctcaaatccggctgcagttaactgccgaggaaaa 54389848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 29918420 - 29918361
Alignment:
Q  19 ccctcggcagttaactgccgaatt-ttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||| |||||||||||||  |||| ||||||||||||| ||||||| |||||||||    
T  29918420 ccctcggcaattaactgccgaataattcg-aaaaccggctgcagttaactgccgaggaaaa 29918361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 29967573 - 29967514
Alignment:
Q  19 ccctcggcagttaactgccgaatt-ttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||| |||||||||||||  |||| ||||||||||||| ||||||| |||||||||    
T  29967573 ccctcggcaattaactgccgaataattcg-aaaaccggctgcagttaactgccgaggaaaa 29967514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 34543216 - 34543156
Alignment:
Q  18 tccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||||||| |||   |||  |||||||| ||||||| |||||||||    
T  34543216 tccctcggcagttaactgccgaagttttagaaatacggctgcagttaactgccgaggaaaa 34543156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 43476185 - 43476245
Alignment:
Q  19 ccctcggcagttaactgccgaa-ttttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||| |||||||||||||| |||| | ||| ||||||||| ||||||| |||||||||    
T  43476185 ccctcggaagttaactgccgaagttttagaaaatccggctgcagttaactgccgaggaaaa 43476245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 7974933 - 7974986
Alignment:
Q  19 ccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcga 72  Q
    |||||||||||||||||||||||| |    |||||||||||| |||||||||||    
T  7974933 ccctcggcagttaactgccgaattctgaagaaaccggctgcagttaactgtcga 7974986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 29097940 - 29097880
Alignment:
Q  15 atatccctcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    |||||||||||||||||||||||||||| | |   ||||||||||| ||||||  |||||||||    
T  29097940 atatccctcggcagttaactgccgaattatgg---aaccggctgcagttaactaccgaggaaaa 29097880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 65315 - 65371
Alignment:
Q  22 tcggcagttaactgccgaattttcgtaaaaccggctgcaattaactgtcgaggaaaa 78  Q
    ||||||||||||||||||| |||   | || |||||||| |||||||||||||||||    
T  65315 tcggcagttaactgccgaaatttaaaagaatcggctgcagttaactgtcgaggaaaa 65371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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