View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3470_high_42 (Length: 358)
Name: NF3470_high_42
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_42 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 4 - 342
Target Start/End: Complemental strand, 43062662 - 43062324
Alignment:
| Q |
4 |
taacaaattgatgtggtaattttagggaaaacaacaacgacaacattcatcagtgtaatatctttgtcagtgacattcacatttggtttagaaactatgg |
103 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43062662 |
taacaagttgatgtggtaattttagggaaaacaacaacgacaacattcatcagtgtaatatctttgttagtgacattcacatttggtttagaaactatgg |
43062563 |
T |
|
| Q |
104 |
atccaacaatagtggagcgaacgacaattaactaccgtaagacaacgaatagtggttaattgcgatgagagtgttttctttgaatggtctatgtagagag |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
43062562 |
atccaacaatagtggagcgaacgacaattaactaccgtaagacaacgaatagtggttaattgcgatgagtgtattttctttgaatggtctgtgtagagag |
43062463 |
T |
|
| Q |
204 |
ttgagaatcataaattcattaccctaaattaaaccacttcaagtttgattggattgattctgatttgactcaaactactaaaaaatattcgacttagatt |
303 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
43062462 |
ttgagaatcataaattcattacctcaaattaaaccacttcaagtttgattggattgattttaatttgactaaaattactaaaaaatattcgacttagatt |
43062363 |
T |
|
| Q |
304 |
ggatcatgaggtcattcaaatcaacctatatacatgaat |
342 |
Q |
| |
|
||||||||||||||||| |||| ||||| |||||||||| |
|
|
| T |
43062362 |
ggatcatgaggtcattcgaatcgacctacatacatgaat |
43062324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University