View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_44 (Length: 348)
Name: NF3470_high_44
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 21 - 325
Target Start/End: Original strand, 42129922 - 42130226
Alignment:
| Q |
21 |
gttattatgattgtaggatacatgaatgaacagaccaggaatatcaattgaatatccttttgattgaatagacatgtcaacagttctcgaagcctaaatt |
120 |
Q |
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| T |
42129922 |
gttattatgattgtaggatacatgaatgaacagaccaggaatatcaattgaatatccttttgattgaatagacatgtcaacagttctcgaagcctaaatt |
42130021 |
T |
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| Q |
121 |
atcagaaacaatatgcttgttgatagttacaaatcacttaaaactatgttttcttggttatgtttttagaagaaaacatcgaaagaaaatacctatcttg |
220 |
Q |
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| T |
42130022 |
atcagaaacagtatgcttgttgatagttagaaatcacttaaaactatgttttcttggttatgtttttagaagaaaacatcgaaagaaaatacctatcttg |
42130121 |
T |
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| Q |
221 |
acaacatcaaataaatttcgctcgacagtaaggatcattagacgccataatattgtatcatgacacgtggcttcatatatgatactaagctatactatac |
320 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42130122 |
acaacatcaaataagtttcgctcgacagtaaggatcattagacgccataatattgtatcatgacacgtggcttcatatatgatactaagctatactatac |
42130221 |
T |
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| Q |
321 |
tatac |
325 |
Q |
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||||| |
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| T |
42130222 |
tatac |
42130226 |
T |
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