View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3470_high_50 (Length: 306)
Name: NF3470_high_50
Description: NF3470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3470_high_50 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 38185429 - 38185735
Alignment:
| Q |
1 |
atagcacgagctaagtgttcttatataagtggtggctgtggtgacgttcgaggtgaccaaactctatgtggtact-atgtataattggtggtatagaagt |
99 |
Q |
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||||||| |||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
38185429 |
atagcacaagctaagtgttcttatataagtggtgaccgtggtgacgttctaggtgaccaaactctatgtgatactcatgtataattggtggtatagaagt |
38185528 |
T |
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| Q |
100 |
gatttggatattatctttttaacattattttttctaacgcccattattttatggaaactcaaatgtgtcccacgtgtttgaaatagatcacatatgaaat |
199 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38185529 |
gatttggatattatttttttaacattattttttttaacgcccattattttatggaaactcaaatgtgtcccacgtttttgaaatagatcacatatgaaat |
38185628 |
T |
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| Q |
200 |
gatgaaatccacgtgagtttgatacaataaaagaccgtgtgttgtagaaaatatttaaaagaaagagtttttaacttttctctgatgtctaatggtgtaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
38185629 |
gatgaaatccacgtgagtttgatacaataaaagaccgtgtgttgtagaaaatatttaaaagaaagagtttttaacatttctctaatgtctaatggtgtaa |
38185728 |
T |
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| Q |
300 |
atttatt |
306 |
Q |
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||||||| |
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| T |
38185729 |
atttatt |
38185735 |
T |
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